AT2G34357.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Domain of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G23540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14499236..14505555 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141804.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 1280 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELLCDDIGT SMCLTPSEPD LPVSEDFGEY MRSRLSQSKR PDHEHLCAVI EELSKTLAED NHRRTPVAYF ACTCRSLDSL FSAHAEPPVD VVQPHIVILS 0101: LVFPKVSAGV LKRDGLALRL VLNVLRLKSA TPECLISGLK CLVHLLTTVE SIMVNEGSDS YNILLNFVTH SDGKVRKLAS SCLRDVLQKS HGTKAWQSVS 0201: GAITEMFQNY LDLAHKSEVG STEGARGAKQ VLYILSTLKE CLALMSKKHI ATLIEGFKVL MILRDPYITR PVIDSLNAVC LNPTSEVPVE ALLEVLSLAA 0301: GLFSGHETSA DAMTFTARLL KVGMTRSFTL NRDLCVVKLP SVFNGLNDII ASEHEEAIFA ATDALKSLIF SCIDESLIRE GVNEIRNSNL NVRKPSPTVI 0401: EKLCATVESL LDYKYHAVWD MAFQVVSAMF DKLGEHSAYF MRNTLQGLSD MQDLPDEGFP YRKQLHECVG SALGAMGPET FLSIVRLNLE ANDLSEVKVW 0501: LFPILKQYTV GGRLSFFTEA IFSMVETMSH KAQKLKLQGL PVASRSVDSL VYSLWALLPS FCNYPVDTVE SFADLGRILC GVLQTQAETH GIICASLNIL 0601: IQQNKEVVEG KEVPTNDASP AMQRATARYD SQHAAANLKV LRLCAPKLLD VLSRIFHECS KDDGGSLQSA IGNLASIAEK KTVSKLLFKT LQELLEATKT 0701: AIAQDESPVS GMDVDNTADK NSSSNLRARL FDLLVSLLPG LDGQEVDTIF SSLKPAMQDS KGLIQKKAYK VLSVILKSSD GFVSKNLEEL LVLMHNICHV 0801: SAKRHKLDCL YFLLAHASRT DDLKERKDIV SSFLPEVILA LKEVNKKTRN RAYDVLVQIG HAYADEENGG DNEKLHGYFD MVVGCLAGEK PQMISAAVKG 0901: VARLTYEFSD LISSAYNLLP STFLLLQRKN KEITKANLGL LKVLVAKSPV EGLHANLKSM VEGLLKWPEG TKNLFKAKVR LLLEMLIKKC GTEAVKSVMP 1001: EEHMKLLTNI RKIKERKEKK YAAGSDISKS QHSKDTSSKV SRWNDTKIFS DVYADSEDSD GDDMDAESHG RSKASSLLKS KASALRSKKS RNQSHLEVDE 1101: SDDEPLDLMD QHKTRLALRS SELRKRKADS DEEAEFDVEG RLVIREGERS KRKELSDADS DAKSSKGSRF SGNSSKKNQK RMKTSESGYA YTGKEYASKK 1201: ASGDLKKKDK LEPYAYWPLD RKMMSRRPEQ RAVAVRGMSS VVKMAKKMEG KSAAEALATT KFKKFKRSGQ KKSAGKKKNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)