AT4G25730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FtsJ-like methyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1); Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200; Bacteria - 7297; Metazoa - 8731; Fungi - 3085; Plants - 939; Viruses - 236; Other Eukaryotes - 9540 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13102906..13106718 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92272.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 821 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKVKGKHRL DKYYRLAKER GFRSRASYKL LQLDAKYSLL HSAHAVLDLC AAPGGWMQVA VEKVPVGSLV LGIDLVPILP VRGCVTMTQD ITRTECKSKI 101: KQVMEQHGVS AFNLVLHDGS PNVGGAWAQE AMSQNALVID SVRLATEFLA RNGNLVTKVF RSRDYNSVLY CLGRLFEKVE VFKPPASRSA SAETYLVGLK 201: YLAPAKIDPR LLDYRHLFKE SAEPTRKVVD VLGGSKQKRN RDGYEDGESI LRRVASAADF IWSENPLDVL GTTTSISFDD QASLPLKEHD LTTEEIKILC 301: DDLPVLGKND FKHILKWRMQ IRKALTPEKK EVAKPEPDVG KEDEENEDDK LLNELEELTN TVDRKKKQAK KILAKRRAKD KARKATGPQM DVLEDGFVDN 401: ELFSLNAIKG KKDLMAVDND EDDNGNAVDS ENEDHGEGAS DDSKDSDRDS DEERQKYTEQ MEEIFEQAYE RYMVKKEGSA KQRKRARQAH AEKLEEGDGD 501: EEMKIDYDSD MNEEKDEANP LVVPLDDGVV QTKEEISNQW FSQNIFAEAV EEGDLGKDDS EDEIANKKKS KNLSKPDKSK QKASKASVLS DQSLPNSSKK 601: EDEFEVVPAP ATDSDSDSSS EDDVHTKAEI LACAKKMLRK KQREQMLDDA YNKHMFVDEG LPKWFVDDEK QHRQPMKPVT KDEVNAMKAQ FKEINARPAK 701: KVAEAKARKK RAAQKRLEKV RKKANTISDT ADISDRSKDK MIDKLYKKAA EPRKPRKELV VSKKGVGVKV GKGQKRVDRR MKSDDRKRGG GKPGRNGQKG 801: TGKAGQKGKR PAGKPRGRKP G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)