AT3G58660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein L1p/L10e family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 3644 Blast hits to 2818 proteins in 411 species: Archae - 34; Bacteria - 198; Metazoa - 1370; Fungi - 494; Plants - 482; Viruses - 5; Other Eukaryotes - 1061 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21701574..21702914 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49973.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTAVSPPPP QEQQLVHASQ TSRVSPKTVE SALNGLINWR SDKSKTEKPQ LLEEDELVYL FVTLKKIPQK TRTNAYRIPL PHPLINPTVD SPEICLIIDD 101: RPKSGLTKDD AMKKIKSENI PITKVIKLSK LKSDYKAFEA KRKLCDSYDM FFTDRRIIPL LPRVIGKKFF TSKKIPVALD LKHRNWKHQI EKACGSAMFF 201: IRTGTCSVIK VGKLSMDICE ITENVMATLN GLVEFLPNKW TYVRSLHLKL SESLALPIYQ SVPDLKLKID AFGSGKSVVQ EEKEGEVEEV VAVDGGEKSV 301: TGKGKKKKGR IHEVRYMDSN VAEVLDEDEI GGDEDNNEIV ESEEKKMKKR KKEVSEVAES EKPMKKAAKG KLKPDVEKPM KKAAKGKSKP DVEKPMQKAA 401: VKGKVKPDVV KLEKSKDGLK AKKTTMVAKD ESGGGLKPKR KSVLRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)