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AT4G05410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a nucleolar protein with seven WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis. YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis.
Computational
Description (TAIR10)
YAOZHE (YAO); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: acceptance of pollen, mitochondrial fission, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleolus, anaphase-promoting complex, small nucleolar ribonucleoprotein complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G21130.1); Has 47131 Blast hits to 24802 proteins in 761 species: Archae - 50; Bacteria - 6358; Metazoa - 18156; Fungi - 10195; Plants - 5539; Viruses - 94; Other Eukaryotes - 6739 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP9UeggNOG:KOG0299EMBL:AL161503EMBL:AY099817
EMBL:BT000325EMBL:CP002687EnsemblPlants:AT4G05410EnsemblPlants:AT4G05410.1
entrez:825889Gene3D:2.130.10.10GeneID:825889Genevisible:Q9M0V4
GO:GO:0005730GO:GO:0006364GO:GO:0009553GO:GO:0009793
GO:GO:0030515GO:GO:0032040GO:GO:0060321GO:GO:0080008
Gramene:AT4G05410.1hmmpanther:PTHR19865hmmpanther:PTHR19865:SF0HOGENOM:HOG000188732
InParanoid:Q9M0V4InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR020472iPTMnet:Q9M0V4KEGG:ath:AT4G05410
KO:K14793ncoils:CoilOMA:AENAYIEPaxDb:Q9M0V4
Pfam:PF00400Pfam:Q9M0V4Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9M0V4PIR:A85068PRIDE:Q9M0V4PRINTS:PR00320
PRO:PR:Q9M0V4PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:Q9M0V4Proteomes:UP000006548RefSeq:NP_192450.1scanprosite:PS00678
SMART:SM00320SMR:Q9M0V4STRING:3702.AT4G05410.1SUPFAM:SSF50978
TAIR:AT4G05410tair10-symbols:YAOUniGene:At.27619UniGene:At.33853
UniProt:Q9M0V4
Coordinates (TAIR10) chr4:-:2743229..2745521
Molecular Weight (calculated) 56521.70 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.79
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)