AT2G18220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Noc2p family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Noc2p family; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT3G55510.1); Has 4709 Blast hits to 3397 proteins in 331 species: Archae - 4; Bacteria - 179; Metazoa - 1693; Fungi - 681; Plants - 249; Viruses - 70; Other Eukaryotes - 1833 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7928254..7931851 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86966.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.01 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||
| Length | 764 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAKDDKKRV KKLKSKKLEA EEELNNVQEI DAHDIVMEQK SDKKRGKKVK SKKAEAEEHE EELKRLQEKD PDFFQYMKEH DAELLKFDAT EIEDDADVEP 101: DTDLEDTEKE GDDEATKMEI AKKVHVQKTI TASMVDAWSK SIEDEAKLGG VRSILRAYRT ACHYGDDTGD DQSTKFSVMS SEVFNKIMIY VLSEMDGILR 201: KLLRFPEDTR GTKETILELT NTRPWKNYNH LVKSYLGNSL HVLNQMTDTE MITFTLRRLK HSSVFLAAFP SLLRKYIKVA LHFWGTGSGA LPVVSLLFLR 301: DLCIRLGSDC VDDCFKGMYK AYVLNCQFVN ADKLKHISFL GNCFIELLGT DISAAYQHAF VFIRQLAMIL REALNTKTKE AFRKVYQWKF IHCLELWTGA 401: VCAYSSQSEL RPVAYPLAQI ITGVARLVPT ARYTPLRLRC VRMLNRLAAA TGTFIPVSML LVDMLEMKEL NRPPTGGVGK GVDLRTLLKV SKPAVKTRAF 501: QEACVYTVVE ELVEHLSQWS CSVAFFELSF IPTIRLRSFC KSTKAERFRK EMKQLISQIE ANSEFVNKKR ALIKFLPNDL AAESFLEDEK KAGKTPLLQY 601: AEIIRQRAQQ RNESLVESDV IVGENSAVFG KNAPSSDDED DEDRMEKGAA AFNSSWLPGS DSKEKEPEEE KTKKKKRKRG GKSKTEKKQD EQGLGEDDVV 701: EDFVLSSDEE EEDLFDIGGD KDEDDAVDEI ADPETKTSKK TKGTYKTWHK AYKKTKKKKA RVAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)