AT3G16840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:5738020..5743042 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 93991.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 826 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN 101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL 201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE 301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS 401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH 501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG 601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL 701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK 801: KRKEEKIGRR DQRRNQKKQR KLMASS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)