AT4G26190.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G36540.1); Has 27570 Blast hits to 17450 proteins in 1040 species: Archae - 84; Bacteria - 2677; Metazoa - 10403; Fungi - 2363; Plants - 1406; Viruses - 96; Other Eukaryotes - 10541 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:13262473..13266282 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 117639.00 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.57 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||
Length | 1057 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MESVSVETLS ETGNSNDGQT NPELIDKHKK RSGKKKRKSR KLDNEVKDND SHISSQIGNA DEAFSSQEKK EGENEKSTSE SQVRLSENLL SSLPAESCQR 0101: DSVSCEEPRA TLHHTDPISC EDSLPDDNRK GSSTKKSKRR EKKKKKEDLS CEEKLLDEVE KITSEDQVHP PNNPLSNGMV QERSGELTQD SCEKPGAAQI 0201: CTDPNLSTCK DSLPDATNMT SSSKRKRNKR RDRNVLKESG VDIGSTNAEV AVTDNTTTEA EGSRSMSIEE NSVASVLING CLKSKVDTVE QLDGTDVQIN 0301: ETVFQTQSTK AKKRKKKKTK TMEACDPLGN TLPTSTESGP VECVENNDGN KEKDGNTEVK EDVREVKYDT ISEAEGSKST TKEEKSVASV VISSCLKSKD 0401: DTVEQKECTD VNISETVAQT QDPKAKRRKK RKTETIEVCD PLGNTLSTSM KSGPVERVEN NDGNGGRELI SYSASQTENY VNGEENGIQN LGKTKEKETD 0501: ENTEVKEDVL GAGVCDVRSK KRKGKKKKTS SADMEVFEPS GSVECLLNQS NEKDMQNFDG NAGQEFGGED MTIKIEKSAT REKSGVQKSG KRKEMTKDKN 0601: IESNQDALDA EGVSDDGHKR EKRKIKNKTN CESVATMDSE SVQSLLYQSN GEGVKNYEGN ADGEIASKDL ASNIEDSATK GESVQDDKNT KKRKKDRKGE 0701: VDQDAKGAEG VSTVEVTTKK SKKKKNLLDH KTDNMEEDSI KKNEKKEEVD QNDLGAEGVS KVEVKTKKSK RKKNSLDHKT DDMEGKDDVS LPRKDEEPEF 0801: DREKLETSLS SSVLIQNDNV AQGVISSETG DVPRCTCKAQ RTRKLVIFDL NGILADIVQG FTGTFLPDGK VSYRSVFRRP FLPSFLDFCF ERFDVAIWSS 0901: RRVGLDYMIN IVMKNHARNL LFCFDQNICT TTKFKTQEKK DKPLFLKDLR RVWDHIGTCI SCGKRKYDET NTLLVDDSPD KALCNPPHTG IFPSPYQYTN 1001: RQDSALGPEG ELRKYLERLA DAENVQKFVA ENPFGQTAIT ETHESWEFYS KAVEAHK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)