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AT4G26190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G36540.1); Has 27570 Blast hits to 17450 proteins in 1040 species: Archae - 84; Bacteria - 2677; Metazoa - 10403; Fungi - 2363; Plants - 1406; Viruses - 96; Other Eukaryotes - 10541 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHGAeggNOG:ENOG410XYXAEMBL:CP002687EnsemblPlants:AT4G26190
EnsemblPlants:AT4G26190.1entrez:828725Gene3D:3.40.50.1000GeneID:828725
GO:GO:0016787Gramene:AT4G26190.1hmmpanther:PTHR12210hmmpanther:PTHR12210:SF40
InParanoid:F4JU71InterPro:IPR004274InterPro:IPR023214iPTMnet:F4JU71
KEGG:ath:AT4G26190ncoils:CoilOMA:ECVENNDPaxDb:F4JU71
Pfam:PF03031Pfscan:PS50969PRIDE:F4JU71PROSITE:PS50969
ProteinModelPortal:F4JU71Proteomes:UP000006548RefSeq:NP_194349.2SMART:SM00577
STRING:3702.AT4G26190.1SUPFAM:SSF56784TAIR:AT4G26190UniGene:At.32202
UniGene:At.46743UniProt:F4JU71
Coordinates (TAIR10) chr4:-:13262473..13266282
Molecular Weight (calculated) 117639.00 Da
IEP (calculated) 5.57
GRAVY (calculated) -1.07
Length 1057 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESVSVETLS ETGNSNDGQT NPELIDKHKK RSGKKKRKSR KLDNEVKDND SHISSQIGNA DEAFSSQEKK EGENEKSTSE SQVRLSENLL SSLPAESCQR
0101: DSVSCEEPRA TLHHTDPISC EDSLPDDNRK GSSTKKSKRR EKKKKKEDLS CEEKLLDEVE KITSEDQVHP PNNPLSNGMV QERSGELTQD SCEKPGAAQI
0201: CTDPNLSTCK DSLPDATNMT SSSKRKRNKR RDRNVLKESG VDIGSTNAEV AVTDNTTTEA EGSRSMSIEE NSVASVLING CLKSKVDTVE QLDGTDVQIN
0301: ETVFQTQSTK AKKRKKKKTK TMEACDPLGN TLPTSTESGP VECVENNDGN KEKDGNTEVK EDVREVKYDT ISEAEGSKST TKEEKSVASV VISSCLKSKD
0401: DTVEQKECTD VNISETVAQT QDPKAKRRKK RKTETIEVCD PLGNTLSTSM KSGPVERVEN NDGNGGRELI SYSASQTENY VNGEENGIQN LGKTKEKETD
0501: ENTEVKEDVL GAGVCDVRSK KRKGKKKKTS SADMEVFEPS GSVECLLNQS NEKDMQNFDG NAGQEFGGED MTIKIEKSAT REKSGVQKSG KRKEMTKDKN
0601: IESNQDALDA EGVSDDGHKR EKRKIKNKTN CESVATMDSE SVQSLLYQSN GEGVKNYEGN ADGEIASKDL ASNIEDSATK GESVQDDKNT KKRKKDRKGE
0701: VDQDAKGAEG VSTVEVTTKK SKKKKNLLDH KTDNMEEDSI KKNEKKEEVD QNDLGAEGVS KVEVKTKKSK RKKNSLDHKT DDMEGKDDVS LPRKDEEPEF
0801: DREKLETSLS SSVLIQNDNV AQGVISSETG DVPRCTCKAQ RTRKLVIFDL NGILADIVQG FTGTFLPDGK VSYRSVFRRP FLPSFLDFCF ERFDVAIWSS
0901: RRVGLDYMIN IVMKNHARNL LFCFDQNICT TTKFKTQEKK DKPLFLKDLR RVWDHIGTCI SCGKRKYDET NTLLVDDSPD KALCNPPHTG IFPSPYQYTN
1001: RQDSALGPEG ELRKYLERLA DAENVQKFVA ENPFGQTAIT ETHESWEFYS KAVEAHK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)