AT5G41020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb family transcription factor | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
myb family transcription factor; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16425883..16427649 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68198.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.41 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.36 | ||||||||||||||||||||||||||||||||||||
| Length | 588 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEKKNKKK KSDAKVDSEE TGEEFISEHS SMKDKEKKRK KNKRENKDGF TGEDMEITGR ESEKLGDEVF IVKKKKKSKK PIRIDSEAVD AVKKKSKKRS 101: KETKADSEAE DDGVEKKSKE KSKETKVDSE AHDGVKRKKK KSKKESGGDV IENTESSKVS DKKKGKRKRD DTDLGAEENI DKEVKRKNNK KKPSVDSDVE 201: DINLDSTNDG KKKRKKKKQS EDSETEENGL NSTKDAKKRR KKKKKKKQSE VSEAEEKSDK SDEDLTTPST SSKRVKFSDQ VEFFPSDDDE GTEDDDEEEV 301: KVVRGKRFTK EEDEMVKNAV LEYIDNHALG DEGIKMVMEC KAYPQLKGCW KEITSALPWR TYNSVYHRAH TIFEAGSQGI WTKEDIELVM EFQKTHGNDW 401: KTLADAMGKH RKHVKDAWRR GRLAGKKKGH WMREEYQNLF DLVNKDLRMK AFKEKHSKHG MLKDNIPWMA ISDVLETRDH VTCCQKWYEQ LISPMVAKGM 501: WANVDDYRLL EELLKLDAAC IDDVDWDNLL ENRDGEACRK RWNQMIIHIG VPKSKTFAEQ VEILSDRYCP DIAEDREDFD NRPYDPED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)