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AT1G79150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612), Armadillo-type fold (InterPro:IPR016024), Nucleolar complex-associated (InterPro:IPR011501); Has 3184 Blast hits to 2630 proteins in 361 species: Archae - 21; Bacteria - 280; Metazoa - 1055; Fungi - 428; Plants - 179; Viruses - 26; Other Eukaryotes - 1195 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5117eggNOG:KOG2153EMBL:CP002684EnsemblPlants:AT1G79150
EnsemblPlants:AT1G79150.1entrez:844256GeneID:844256Gramene:AT1G79150.1
hmmpanther:PTHR14428hmmpanther:PTHR14428:SF5InParanoid:F4IDJ0InterPro:IPR005612
InterPro:IPR011501InterPro:IPR016024iPTMnet:F4IDJ0KEGG:ath:AT1G79150
KO:K14834ncoils:CoilOMA:IMLCDDRPaxDb:F4IDJ0
Pfam:PF03914Pfam:PF07540PRIDE:F4IDJ0ProteinModelPortal:F4IDJ0
Proteomes:UP000006548RefSeq:NP_178036.2STRING:3702.AT1G79150.1SUPFAM:SSF48371
TAIR:AT1G79150UniGene:At.28077UniProt:F4IDJ0
Coordinates (TAIR10) chr1:-:29772716..29777874
Molecular Weight (calculated) 94895.20 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.65
Length 830 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKNRRKQKV IPPPLLPPDV AEEDIEFSDE DLKYVKENTD YAQFVSQIDT AAINKQCGGR VMTVEDKYEE ERSKRKTLQE EKGNGEILVD PVDVLPVKTL
101: DGKLHYRTES KKSKLAEAET DEAEKDVLED EHVLNKSQRR EKAKKSKREA KKHEKDLPDE ILQEEEETPQ AAVLAEVKEE LSAEESFENK KNKIAELGML
201: LLSDPEANIK TLKDMLDICK DQNTKIVKLA LLSLLAVFKD IIPGYRIRLP TEKELEMKIS KEVKKTRFYE STLLKAYKSY LQKLIIFEKQ SVYNQIANRC
301: LCTLLEAVPH FNYRDNLLIA VVRNISSPDE VVRRLCCSTI RYLFSNEGKH GGELTVQAVR LIADHVKAHN CQLHPNAIEV FMSIRFDEDI GKPNKEDEHN
401: KKYKKNNKRK TQEEQNQVQE NERKKSKKDM MSKIRDEVSA DHRGVTYEPD AKERRKMQTE TLSAVFETYF RILRNTMYTI GERTEEIPTS NPGAFGSHPL
501: LAPCLDGLAK FTQQLDLDYM GDLMNYLKKL ASSSSSVSNN TKQKNSKLLT VSERLRCCLV AFKVMRSNLN ALNVDLQDFF VQLYNLILEY RPGRDSGVIL
601: AESLKIMLCD DRHQDMQKAA AFVKRLATFA LCFGCAESMS ALVTLKTLLQ KNVKCRNLLE NDAGGGSVSG SIAKYQPYAT DPNLSGALAT VLWELSLLSK
701: HYHPAISTMA TTVSNMNTSQ SQTFLSAVTP QQAFADFSLV KESFEPKNES RKLNNKRKRE SLPEEAKNVP EIDMVKLSKK LKENFTILRD IKEDERVRME
801: LLQSEEKKPL KKQNNVVKKK LKNPKSKKQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)