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AT3G55510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Noc2p family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
REBELOTE (RBL); INVOLVED IN: floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT2G18220.1); Has 382 Blast hits to 364 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 131; Plants - 77; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5604eggNOG:KOG2256EMBL:AK226780EMBL:CP002686
EnsemblPlants:AT3G55510EnsemblPlants:AT3G55510.1entrez:824716GeneID:824716
GO:GO:0005634GO:GO:0010582Gramene:AT3G55510.1hmmpanther:PTHR12687
hmmpanther:PTHR12687:SF8HOGENOM:HOG000085149InterPro:IPR005343KEGG:ath:AT3G55510
KO:K14833OMA:GKIMNLRPANTHER:PTHR12687Pfam:PF03715
PhylomeDB:Q0WVH0Proteomes:UP000006548RefSeq:NP_567023.1STRING:3702.AT3G55510.1
TAIR:AT3G55510tair10-symbols:RBLUniGene:At.35020UniProt:Q0WVH0
Coordinates (TAIR10) chr3:+:20579232..20582124
Molecular Weight (calculated) 68370.80 Da
IEP (calculated) 9.12
GRAVY (calculated) -0.33
Length 594 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKLGKKARK FAKKNLQSVE KRSRKLKPFI KKKFAKRNER HQAGDKQEKK VEQQPKKRCQ EEEFQDIAID AVFGKDDDEV LRDGDSDSDG YLDELVNETD
101: SDIMKCKVLS RSFLATCCDM VDKEQYVPAL VRLLNWYRAA CQYGHEPSGI ARPNIYYDIE DSETFAKVII FVLQKADHTF RSILGLSDSS TKEKILKLKN
201: NPKWDSLKPL VKSFFRSTLH LVKQAGDLEI ISFTLTQLRV SIVFLAAFPD LLKKLIKISV HLWVTGEETI SQQAFLILKD ISMVFNSECF DSCLINMYKA
301: FLHDCDIPKA NSEQRPFLRD SLVELCSQDV QKSYTKASVS ITQLAKLLKM ALATKNKEAV EKIHSGEYIN CVDLWVNFIS ANVQDCDLQP LLYTIVQVIN
401: GVAQLIIGPR YLLLRVKCIH WLNHLSRTSG IFIPIASLVL DMLEYKTTND GEKQEQKLEA VSTVKLPKNW LKSQNFQEQC IFSVIELLAV HFAQWSFHIS
501: FPDLATIPVM RLKKFHERST MEGLKRVVKR FIEQVESNIE FVQRKRDDVT FSPNDQQSAD TFMQLEKQNA NAPYTQYYQS IIDKALGTNK KKKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)