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AT1G68990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : male gametophyte defective 3
Curator
Summary (TAIR10)
MGP3 (male gametophyte-defective 3) belongs to a small family of nuclear-encoded Phage type RNA polymerases (RPOTs) involved in the transcription of mitochondrial genes in Arabidopsis thaliana. Mutation in MGP 3 significantly retarded pollen tube growth and caused defective embryo development.
Computational
Description (TAIR10)
male gametophyte defective 3 (MGP3); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: pollen tube growth, transcription, ovule development, embryo development ending in seed dormancy; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein (TAIR:AT5G15700.1); Has 1300 Blast hits to 1282 proteins in 331 species: Archae - 0; Bacteria - 40; Metazoa - 135; Fungi - 222; Plants - 198; Viruses - 137; Other Eukaryotes - 568 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G68990-MONOMERBioCyc:ARA:GQT-1526-MONOMEREC:2.7.7.6eggNOG:COG5108
eggNOG:KOG1038EMBL:AC011665EMBL:CP002684EMBL:Y08137
EMBL:Y09006EMBL:Y09432EnsemblPlants:AT1G68990EnsemblPlants:AT1G68990.1
entrez:843232ExpressionAtlas:P92969Gene3D:1.10.1320.10Gene3D:1.10.287.260
GeneID:843232Genevisible:P92969GO:GO:0003677GO:GO:0003899
GO:GO:0005739GO:GO:0006351hmmpanther:PTHR10102hmmpanther:PTHR10102:SF3
HOGENOM:HOG000241996InParanoid:P92969InterPro:IPR002092InterPro:IPR024075
InterPro:IPR029262KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6ncoils:Coil
PANTHER:PTHR10102PaxDb:P92969Pfam:P92969Pfam:PF00940
Pfam:PF14700PhylomeDB:P92969PIR:D96714PRIDE:P92969
PRO:PR:P92969PROSITE:PS00489PROSITE:PS00900ProteinModelPortal:P92969
Proteomes:UP000006548RefSeq:NP_177063.1scanprosite:PS00489scanprosite:PS00900
SMART:SM01311SMR:P92969STRING:3702.AT1G68990.2SUPFAM:SSF56672
TAIR:AT1G68990tair10-symbols:MGP3UniGene:At.207UniGene:At.35461
UniProt:P92969
Coordinates (TAIR10) chr1:-:25935499..25940755
Molecular Weight (calculated) 110936.00 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.47
Length 976 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT
101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG
201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL
301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSARHM
401: VIPYLPMLIP PQNWTGYDQG AHFFLPSYVM RTHGAKQQRT VMKRTPKEQL EPVYEALDTL GNTKWKINKK VLSLVDRIWA NGGRIGGLVD REDVPIPEEP
501: EREDQEKFKN WRWESKKAIK QNNERHSQRC DIELKLEVAR KMKDEEGFYY PHNVDFRGRA YPIHPYLNHL GSDLCRGILE FCEGKPLGKS GLRWLKIHIA
601: NLYAGGVDKL AYEDRIAFTE SHLEDIFDSS DRPLEGKRWW LNAEDPFQCL AACINLSEAL RSPFPEAAIS HIPIHQDGSC NGLQHYAALG RDKLGADAVN
701: LVTGEKPADV YTEIAARVLK IMQQDAEEDP ETFPNATYAK LMLDQVDRKL VKQTVMTSVY GVTYSGARDQ IKKRLKERGT FEDDSLTFHA SCYAAKITLK
801: ALEEMFEAAR AIKSWFGDCA KIIASENNAV CWTTPLGLPV VQPYRKPGRH LVKTTLQVLT LSRETDKVMA RRQMTAFAPN FIHSLDGSHM MMTAVACNRA
901: GLSFAGVHDS FWTHACDVDV MNTILREKFV ELYEKPILEN LLESFQKSFP DISFPPLPER GDFDLRKVLE STYFFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)