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AT5G39840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent RNA helicase, mitochondrial, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent RNA helicase, mitochondrial, putative; FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial degradasome RNA helicase subunit C-terminal (InterPro:IPR022192), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, mitochondrial (SUV3) (TAIR:AT4G14790.1); Has 4068 Blast hits to 4044 proteins in 754 species: Archae - 43; Bacteria - 1236; Metazoa - 267; Fungi - 388; Plants - 157; Viruses - 16; Other Eukaryotes - 1961 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1800-MONOMEREC:3.6.4.13eggNOG:ENOG410XSEYeggNOG:KOG0953
EMBL:AB010077EMBL:AB024023EMBL:CP002688EnsemblPlants:AT5G39840
EnsemblPlants:AT5G39840.1entrez:833980Gene3D:3.40.50.300GeneID:833980
Genevisible:F4KFV7GO:GO:0003723GO:GO:0004386GO:GO:0005524
GO:GO:0005634GO:GO:0042645Gramene:AT5G39840.1HOGENOM:HOG000175283
InParanoid:F4KFV7InterPro:IPR001650InterPro:IPR014001InterPro:IPR022192
InterPro:IPR027417KEGG:ath:AT5G39840KO:K17675OMA:NFPFVEK
PaxDb:F4KFV7Pfam:F4KFV7Pfam:PF00271Pfam:PF12513
Pfscan:PS51192Pfscan:PS51194PRIDE:F4KFV7PRO:PR:F4KFV7
PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4KFV7Proteomes:UP000006548
RefSeq:NP_198800.1SMART:SM00487SMART:SM00490SMR:F4KFV7
STRING:3702.AT5G39840.1SUPFAM:SSF52540TAIR:AT5G39840UniGene:At.55263
UniProt:F4KFV7
Coordinates (TAIR10) chr5:+:15946769..15949186
Molecular Weight (calculated) 88199.10 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.30
Length 776 amino acids
Sequence (TAIR10)
(BLAST)
001: MARGVAGVLR RAYSSRVTVL FSTRNLHSFR ESESRSLCNS DFDVPTNRFC SGNRVRIQFP WNDYRFGCFE IGKVRSFSST VDNNGENDDI EESVGSESDD
101: YDEEGLINEL SDVDEGLLND SVVAETDEIG SEAARALNDR YHDPVELYRE LRGSEVRSKL QHSEWDSLHE IFGFFAQSGW AANQALAIYI GKSFFPTAVS
201: KFRDFFIEKC GIEVVQDLVR VGPTDVAVKF LFPVFVEFCI EEFPDEIKRF KSIVDTADLT KPATWFPFAR AMKRKIVYHC GPTNSGKTYN ALQRFMEAKN
301: GLYCSPLRLL AMEVFDKVNA LGIYCSLLTG QEKKYVPFAN HVSCTVEMVS TDELYEVAVL DEIQMMADPS RGHAWTKALL GLKADEIHLC GDPSVLDIVR
401: KMCADTGDEL VEEHYERFKP LVVEAKTLLG ELKNVKSGDC VVAFSRREIF EVKMAIEKHT NHRCCVIYGA LPPETRRQQA KLFNDQENEY DVLVASDAVG
501: MGLNLNIRRV VFYSLNKYNG DKIVPVAASQ VKQIAGRAGR RGSRYPDGLT TTLHLEDLNY LIECLQQPFD EVTKVGLFPF FEQIELFAAQ VPDMAFSNLL
601: EHFGKHCRLD GSYFLCRHDH VKKVANMLEK VEGLSLEDRF NFCFAPVNIR NPRAMHNLYR FASSYSQNMP VNVAMGIPKS SAKSDAQLLD LESRHQILSM
701: YLWLSNQFEE NFPFVEKVEA MATNIAELLG ESLSKASWKM ESKEEKVKGQ MKEDRGYERP ASLIKLVKKR KDEKLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)