AT5G39840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ATP-dependent RNA helicase, mitochondrial, putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ATP-dependent RNA helicase, mitochondrial, putative; FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial degradasome RNA helicase subunit C-terminal (InterPro:IPR022192), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, mitochondrial (SUV3) (TAIR:AT4G14790.1); Has 4068 Blast hits to 4044 proteins in 754 species: Archae - 43; Bacteria - 1236; Metazoa - 267; Fungi - 388; Plants - 157; Viruses - 16; Other Eukaryotes - 1961 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:15946769..15949186 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 88199.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 776 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MARGVAGVLR RAYSSRVTVL FSTRNLHSFR ESESRSLCNS DFDVPTNRFC SGNRVRIQFP WNDYRFGCFE IGKVRSFSST VDNNGENDDI EESVGSESDD 101: YDEEGLINEL SDVDEGLLND SVVAETDEIG SEAARALNDR YHDPVELYRE LRGSEVRSKL QHSEWDSLHE IFGFFAQSGW AANQALAIYI GKSFFPTAVS 201: KFRDFFIEKC GIEVVQDLVR VGPTDVAVKF LFPVFVEFCI EEFPDEIKRF KSIVDTADLT KPATWFPFAR AMKRKIVYHC GPTNSGKTYN ALQRFMEAKN 301: GLYCSPLRLL AMEVFDKVNA LGIYCSLLTG QEKKYVPFAN HVSCTVEMVS TDELYEVAVL DEIQMMADPS RGHAWTKALL GLKADEIHLC GDPSVLDIVR 401: KMCADTGDEL VEEHYERFKP LVVEAKTLLG ELKNVKSGDC VVAFSRREIF EVKMAIEKHT NHRCCVIYGA LPPETRRQQA KLFNDQENEY DVLVASDAVG 501: MGLNLNIRRV VFYSLNKYNG DKIVPVAASQ VKQIAGRAGR RGSRYPDGLT TTLHLEDLNY LIECLQQPFD EVTKVGLFPF FEQIELFAAQ VPDMAFSNLL 601: EHFGKHCRLD GSYFLCRHDH VKKVANMLEK VEGLSLEDRF NFCFAPVNIR NPRAMHNLYR FASSYSQNMP VNVAMGIPKS SAKSDAQLLD LESRHQILSM 701: YLWLSNQFEE NFPFVEKVEA MATNIAELLG ESLSKASWKM ESKEEKVKGQ MKEDRGYERP ASLIKLVKKR KDEKLV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)