AT5G09840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Putative endonuclease or glycosyl hydrolase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G64710.1); Has 416 Blast hits to 392 proteins in 63 species: Archae - 2; Bacteria - 5; Metazoa - 78; Fungi - 41; Plants - 277; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3059027..3061970 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102373.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.54 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||
| Length | 924 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFGSLPSKS LLFRLSSSST TQSHRRTITL FITNIHSSPF STTTTSGSNF VSGSSHSPSR RPQQDEESRS VRVSVWWDFL SCNLPVDTNV YKVAQSITAA 101: IRNSGIKGPI TITAFGDVLQ LPRSNQDALS ATGISLTHVP NGGKNSADRS LITDLMCWVS QNPPPAHLLL ISSDKEFASV LHRLRMNNYN ILLASKSSAP 201: GVLCSAASIM WDWDALIKGE CVTGKHFNQP PDGPYNSWYG HYRIPLLDPF AIATTTEQSS SSVKIEELSE SVNSNAVVNL RPIPKEVVDK IRSIVSLYPK 301: GAAITELRAE LSKSNLAIDK DFYGHKKFSK FLLSMPDILQ VTTVSEGLFM IRAVTEKKPP MRLDSSPRLS TAVDQKIKDK ETVNAPSPKL ISDVELAAER 401: RRDGLLGKKQ EKVLESDKIV KEESSESSQD PILVGQKDVK ANVKPVETNQ VALVAWSDSS MEDGFFQKLK RLWYGSPEME LEHLPEMKSV SGSGDTHRED 501: NDLKSSSQGS GNKHKEDKDL KSSSQGTVPM SQISPSFVAE SVDEVKVGAD DVDSKDKDAS PGFLGRLLKS FKFWGKNTKS SKDSSGNQEL VNVDSQVQDI 601: FAKEYFWSDI ESFINSPRGF AIVSHSRTRE VMAKNVQEEG PSCLRLLDES SMLHLVTLLI SEKKWIEETP SSSLPFRIIK GSSPGHRHAS NGLSSIFSDS 701: SKSQWQKQNG EKSGKNVAHA GVSVGSVDRK ELERYKSNAI ADCQKMIKKI TEEHPEGYSL IRFRKDFLEE YGYHLAVDKL GYDNLQSLIR VMHGVRIASG 801: YIFPSTPSPN AKSKEDDSDL AFAELGPVSD TTTTHPTTKK LPVYEPSLSE DEEDSGSERD NPEKKKQQMM SKEGKESSLL QILDSYYTNK DGELKENPVE 901: RKLVSNGRKQ KPTKTYSFVK DSEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)