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AT1G42440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5177eggNOG:KOG1980EMBL:AF361826EMBL:AY133551
EMBL:BT000755EMBL:CP002684EnsemblPlants:AT1G42440EnsemblPlants:AT1G42440.1
entrez:840848GeneID:840848GO:GO:0005634GO:GO:0042254
Gramene:AT1G42440.1hmmpanther:PTHR12858HOGENOM:HOG000165026IntAct:Q9ASU6
InterPro:IPR007034InterPro:IPR012948InterPro:IPR030387KEGG:ath:AT1G42440
KO:K14799OMA:VQVNKAHPfam:PF04950Pfam:PF08142
Pfscan:PS51714PhylomeDB:Q9ASU6PROSITE:PS51714Proteomes:UP000006548
RefSeq:NP_564480.1SMART:SM00785SMART:SM01362STRING:3702.AT1G42440.1
TAIR:AT1G42440UniGene:At.19120UniGene:At.67019UniProt:Q9ASU6
Coordinates (TAIR10) chr1:-:15895528..15899939
Molecular Weight (calculated) 89460.70 Da
IEP (calculated) 7.23
GRAVY (calculated) -0.55
Length 793 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSRVQVNK AHKTRFSSKS SRNLHRTNLQ DSGRIGKSDS NYVKGAKAAR VQRGKMLREQ KRAAVLKEKR ASGGINSAPR VIVLFPLSAS VELNSLGEDV
101: LKLLSSDGSG IASSTVASSE YKLRATVLKA PHGDLLTCME MAKVADLMAF VASASAPWEE NSSNFIDSFG SQCLSVFRSI GLPSTTVLIR DLPSDVKKKN
201: EMKKMCASQL ASEFPEDCKF YPADTRDELH KFMWLFKAQR LTVPHWRSQR SYIVARKAGM LVDDESSGKC TLLLSGYLRA RKLSVNQLVH VSGVGDFQFS
301: KIEVLKDPFP LNERKNQNSM ELDDSHDEEV LKSLVPDPMK QEPLVIENTP DPLAGEQTWP TEEEMAEADK NQKQGRLKKK TLPRGTSEYQ AAWIVDETDE
401: EDSDNGDSDD NGMVLDRGED SNQEGMYDQE FEDDGKSLNL RDIDTETQNE SEMVDDEDLT EEQIKDEIKK IKEAYADDEE FPDEVETPID VPARRRFAKY
501: RGLKSFRTSS WDPNESLPQD YARIFAFDNV ARTQKLVLKQ ALKMEEEDRD DCVPIGSYVR LHIKEVPLGA ASKLSSLVNT TKPIIGFGLL QHESKMSVLH
601: FSVKKYDGYE APIKTKEELM FHVGFRQFIA RPVFATDNFS SDKHKMERFL HPGCFSLASI YGPISFPPLP LVVLKISEGS DPPAIAALGS LKSVEPNKII
701: LKKIILTGYP QRVSKMKASV RYMFHNPEDV KWFKPVEVWS KCGRRGRVKE PVGTHGAMKC IFNGVVQQHD VVCMNLYKRA YPKWPERLYP QLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)