AT5G21160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LA RNA-binding protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7199191..7203879 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91381.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 826 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMAETEGSVA DDRELITREG GIGTKSPWKT TTSPVETIDA PVMGAHSWPA LADAAQQPRP KNPPAPAPAP PSKNIPTSIP IPTPAVTGQA KSKGGGKANP 101: GHKNPSGRHS KPGPRSNQNG PPPPPYLVHA VPYHPPPFPP MVPLPHAAGP DFPYAPYPPY PVPVPPVTES GNEKQVQASP LPPVLPAPQG DPGKPWPHQR 201: GFDPRNMPQG AGPRNFGRPP FMGPAPGFLV GPGPGFPGPV YYLPGPPPGA IRGPYPPRFA PYPVNQGPPI LSPEKLDLRD RVLKQVEYYF SDENLENDHY 301: LISLMDEEGW VPTKIIAGFK RVKAMTMDVD FIVYALGFSN SVEVQGDQIR KRDKWSDWIP ASKKSTSAET IGDGDKDSPK SITSGDNFGN PSKGSSKPTV 401: SDFSSEGAQS SRTNNYKSGN LKSSADEKRN VEDLSNDFSN TFLLDEELDL EHRSPRKSGL SMSKSIEYED DDMAVDDQDI QKLVIVTQNS GKSDGAGIGG 501: TEAKNIPKEL ASTINDGLYY FEQELKKKRS GRRKNNSHLD TKDGKIKSGE GLNTKLGENS AANDGGEEHG IITSRRKQNK GTHKHHTAHA RRFFSSNIRN 601: NGNISESPPS SSIGFFFGST PPDSHGPRLS KLSSSPQCTL SGSSPPVGSL PKSFPPFQHP SHQLLEENGF KQEKYLKYRK RCLNERKKLG SGCSEEMNHL 701: YRFWSYFLRD TFVLSMYDDF QKFALEDAAG NYDYGLECLF RFYSYGLEKH FDEDLYKDFE KLSLDFYHKG NLYGLEKYWA FHHYRGKEEP ITKHPELEKL 801: LKEEFRSIDD FRAKETITNQ KENKSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)