AT1G09620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT4G04350.1); Has 16931 Blast hits to 15894 proteins in 2953 species: Archae - 757; Bacteria - 11010; Metazoa - 639; Fungi - 488; Plants - 264; Viruses - 0; Other Eukaryotes - 3773 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3113077..3116455 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123458.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.85 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1091 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASESKSYAR RDRLLEIEAT VRKWWEDEDV FRAESCENLP KPGEKFFSTF PFPYMNGYLH IGHAFSLSKV DFASAYHRLR GANVLLPFGF HCTGMPIKAS 0101: ADKLRREIEQ FGNPPVFTAE DTTKVPEVQE ESSDTIALPI PGQFKGKKSK VAAKAGGQVY QWEIMRSFGL TDSEIANFRE PSEWLYYFPP LAVEDLRAYG 0201: LGCDWRRSFV TTDVNPFFDA FVRWQMRKLK SMGKIVKDRR YTIFSPLDGQ PCADHDRATG EGVQPQEYTL IKMEVVKPFP LKLGPLEGKR VFLAAATLRP 0301: ETMYGQTNAW VLPDGKYGAY EISETEVFIL TERAALNLAY QNFSKNPQEP SCLVELTGYD LIGLPLRSPL SVNEIIYALP MLTILTNKGT GIVTSVPSDA 0401: PDDYMALQDL IKKPALQDKY GVKTEWLPTE IIPIINIPEF GDKAAEKVCL DLKIKSQNDK EKLAEAKRLT YLKGFTEGTM LIGEFFGRKV QEIKPIIKTK 0501: LIETGEAIIY SEPEKPVMSR SGDECVVALT DQWYITYGES EWRKIAEECL SKMNLYSDET RHGFEHTLSW LNQWACSRSF GLGTRIPWDE QFLVESLSDS 0601: SLYMAYYTVA HIFHDGDMYK GSKSLIRPQQ MNDEVWEYLF CDGPYPKSSD IPSAVLSEMK QEFDYWYPLD LRVSGKDLIQ NHLTFFIYNH TALMANRNWP 0701: RGIRCNGHIM LNSEKMSKST GNFRTLRQSI EEFSATGTRF CLADAGDGVD DANFAFETAN AAILRLTKEL TWMEEVLDVE SSLRTGPPST YADKVFENDM 0801: NIALRLTERA YKDCLFREAL KNGFYDLQAA RDEYRLSCGT GGMHHDLLLK FMDVQTRLIV PICPHFADYV WRKVLNKEGC VLTAGWPPSN EPDLVLKSAN 0901: KYLQDSIVLM RKLLQKQLSG SKKGAKKGAQ VTAVPEGKLK GLVYVNEQFD GWRAHCLRIL QSRFDQQTCS FPPDTEMLAE LSATLLQEGK NLKAIQKVCM 1001: PFLKFKKDEA ISIGTQALNL RLPFGEIEVL QSNKDLIRRQ LGLEEVEIYS ASDPDDVSIA GPHASLLTQN PPSPGSPTAI FVTSTSVCPP S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)