AT1G80410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2753 (EMB2753); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), N-terminal acetyltransferase A, auxiliary subunit (InterPro:IPR021183); Has 4153 Blast hits to 3182 proteins in 554 species: Archae - 484; Bacteria - 1303; Metazoa - 580; Fungi - 247; Plants - 139; Viruses - 3; Other Eukaryotes - 1397 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30227963..30234832 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102152.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 897 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGASLPPKEA NLFKLIVKSY ETKQYKKGLK AADAILKKFP DHGETLSMKG LTLNCMDRKT EAYELVRLGV KNDIKSHVCW HVLGLLYRSD REYREAIKCY 101: RNALRIDPDN LEILRDLSLL QAQMRDLSGF VETRQQLLTL KPNHRMNWIG FAVSQHLNAN ASKAVEILEA YEGTLEDDYP PENELIEHTE MILYKVSLLE 201: ESGSFDKALE ELHKKEPKIV DKLSYKEQEV SLLSKVGRLE EANKLYRVLL SMNPDNYRYH EGLQKCLGLY SESGQYSSDQ IEKLNALYQS LSEQYTRSSA 301: VKRIPLDFLQ DENFKEAVAK YIKPLLTKGV PSLFSDLSSL YDHPRKPDIL EQLVVEMKHS IGTTGSFPGS DVKEPPSTLL WTLFFLAQHY DRRGQYDVAL 401: CKIDEAIAHT PTVIDLYSVK SRIMKHAGDL TAAAALADEA RGMDLADRYI NSECVKRMLQ ADQVPLAEKT AVLFTKEGDQ LNNLHDMQCM WYDLASGDSY 501: FRQGDLGRAL KKFLAVEKHY ADISEDQFDF HSYCLRKMTL RSYVDMLKFQ DRLHSFPYFH KAAIRAIRCY LKLHDSPKST AGEDEMSKLA PAQKKKIKKQ 601: KKAEARAKKE AESKSEESTA SGASKSGKRN VKPVDPDPHG QKLIQVEEPM AEASKYLRLL QKHSPNSLET HLLSFEVNMR KQKFLLAFQA VKQLLKLGAE 701: NPDSHRSLVK FFLMTESISA PTTEAEKLRW RVLEAERPSI SQLQNKSLME ANKEFLGRHE DSLVHRAAYA EMLYILDPSK KTEAIKIIED STNKVVQTNE 801: ALGQAREWKL KDCIAVHTLL DTVLLDSQAA SRWKSRCAEY FPCSTHFEGK HCSLMPDSVY NSSRKSNENG DTPNHPMGQT ELSDGQLEAF KSLSVAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)