AT4G27640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G19820.1); Has 2274 Blast hits to 2138 proteins in 232 species: Archae - 0; Bacteria - 13; Metazoa - 858; Fungi - 732; Plants - 312; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13798013..13802976 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115238.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.52 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1048 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAQSLELLLI QFLMPDNDAR RQAEDQIKRL AKDPQVVPAL VQHLRTAKTP NVRQLAAVLL RKRITGHWAK LSPQLKQHVK QSLIESITVE NSPPVRRASA 0101: NVVSVVAKYA VPAGEWPDLL TFLFQCSQSA QEDHREVALI LFSSLTETIG NTFRPYFADL QALLLKCMQD ESSSRVRVAA LKAVGSFLEF TNDGDEVVKF 0201: RDFIPSILDV SRKCIASGEE DVAILAFEIF DELIESPAPL LGDSVKAIVQ FSLEVSCNQN LESSTRHQAI QIVSWLAKYK YNSLKKHKLV IPILQVMCPL 0301: LAESSDQEDD DDLAPDRASA EVIDTLAMNL PKHVFLPVLE FASVHCQSTN LKFREASVTA LGVISEGCFD LMKEKLDTVL NIVLGALRDP ELVVRGAASF 0401: AIGQFAEHLQ PEILSHYQSV LPCLLIAIED TSEEVKEKSH YALAAFCENM GEEIVPLLDH LMGKLMAALE NSPRNLQETC MSAIGSVAAA AEQAFNPYAE 0501: RVLELMKFFM VLTKDEDLRA RARSTELVGI VAMSVGRKGM EAILPPFIDA AISGFELEFS ELREYTHGFF SNVAEILDDT FAQYLPRVMP LVFASCNLDD 0601: GSAVDIDESD DENVNDFGGV SSDDDADDEP RVRNISVRTG VLDEKAAATQ ALGLFALHTK SAFAPYLEES LKIMDKHSAY FHEDVRLQAV TGLKHILAAA 0701: HAIFQTHNDG TGKANEILDT VMNNYIKTMT DDDDKEVVAQ ACISVADIMK DYGYPAIQKY LSPLVDATLL LLTEKAACQQ LEDESDIDDD DTGHDEVLMD 0801: AVSDLLPAFA KCMGSQFEPV FAQFFEPLMK FAKASRPPQD RTMVVASLAE VAQDMGLPIS SYVDRLMPLV LKELGSPEAT NRRNAAFCVG ELCKNGGETA 0901: LKYFGDVLRG ISPLFGDSEP DLAVRDNAAG ATARMIVVHP QLVPLNQVLP VFLRGLPLKE DQEESMAVYT CIYSLVSSSN PQIFSHVPEL VKIFGQVLES 1001: PVEKVEVKAI VGRTFSHLIS VYGNQLQPII SSLPPSQANV LAAFASTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)