AT2G01130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DEA(D/H)-box RNA helicase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:88847..94635 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 125756.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1113 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY 0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR 0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES 0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT 0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG 0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS 0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL 0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR 0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL 0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP 1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH 1101: MSKLLKKGKK DHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)