AT4G00800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024); Has 298 Blast hits to 228 proteins in 78 species: Archae - 0; Bacteria - 17; Metazoa - 93; Fungi - 89; Plants - 34; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:337114..345581 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 211999.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1913 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELDLDSFLV SDSDSDSDLD SSSVPHRTVD EILNASSSSS ASSSPPSSPP SINRRKQDDP NRRLSEALTN VAVLRPESEL HRGFPPTRRN STSSSSLRQL 0101: PLPSLLAGVR SNVKPGAALA AAVAASRLVP TPHAAIIKSR RASSASSELL LQVSNQEEDD HEVLSSNGDS VGVAAGSVSA DDFRSFGGES LLEDEDNGVS 0201: GVASLEDEAK VMEVQASDIT ESLNPDLVTV SSGFDSEGNV STEKEAETTM EAGNAAIDDD TDETMLVASL VESSESQHLT DSEGKCDDAK VSNDEESSVG 0301: DVKSDKSDII IPESKKEGGD AFIPDDGSSM SGISELVEER IAELENERMS KRERLKSQSF RKQLVLAEEF EKKQAYTGLH WEEGAAAQPM RLEGVKIGST 0401: NLGYFDVDAD NVISRTISSQ AFKRDHGSPQ VLAVHLNYIA VGTSKGVIVV VPSKYSSDHA DQMESKMIWL GLQGERSQSP VTSVCFNQIG SLLLAGYGDG 0501: HVTVWDMQRA SIAKVITEHT APVVYAFFLG RDSQGSRQFK VITSDTKGVV FKHSFSYARL LNMYTVETQC LLDGQKNGTV LSASPLPDEN FGSSLVSSKG 0601: GNSAVPSSSI SSMMGGVVGV GSTWKLFNED STSVEEGVVI FATYQTGLVV KLIPNLEVYA QLPRPEGVRE GSMPYTAWRR STENYSKEAE DRVSFLVIAW 0701: DRRVQVAKLV KSDIKEYAKW SLDSPAIGVV WLDDQLLVIP TVTGHLYLFT RDGVVIHQTN FSVAGSSGND LISYHTYFTN VFGNPEKAYH NSMGVRGASV 0801: YILGTAHLVI SRLLPWKERV DVLRRGGDWM GAFNMAMSLF NGQAHGVVDL PKTVDAIREA IAPSLAELLL SYVDEVFSYI SIAFSNQIEN NGVTHEPSSG 0901: INNVNLEIEE QYNRVGGVAV EFCVHINRMD LLFDEIFSRF VAVQQRDTFL ELLEPYILRD MLGSLPPEIM QALVEHYSRK GWLQRIEQCV LHMDISSLDF 1001: NQVVRICREH GLYGALLYLF NKGLDDFRSP LEELLIVLRN SEKQRATAIG YRMLVYLKYC FLGLAFPPGH GTLNPTRWPS LRSELIQFLL EKSNAHDSST 1101: CVTSRLNYLN LYHLLEMDTE ATLDVLRYAF VENEMVKHES HLLEYGEVSV ESKTDGSLPE VSNDILIQNL VDALVHVPDW GVSNESGDPI DSKSDKNWPS 1201: KEDTSHLFEF VAYYAARGRV SISKSVLAQI LDYLTSDHIL PTYNVSSKMR ENQLLNLLKA VPETDWDADY VSQLCEKAHF YQVCGYIHII DRRYVAALDS 1301: YVKEADEPIH LFCYVNKMLS QLSGDEFTAF QSAIISRIPE LLDLSRQGAF FLIICNLKDT IKRIQEQLHS HPRSLFLYLK TVIEVYLSGS LDFSRLRKHE 1401: AVDSSGENIR RDIPKEAKIY LEGLNDFPKF IQDNPVNVTD DMIELYVELL CKYEPKSVLK FLETFDSYRV EHCLRLCQEY GIVDAAAFLL ERVGDAGSAL 1501: SLTLSGLNEK YVELEIAVEC LMSEMKLGAS EGASLEHFSS ALELKEVHDI QGVLQACIGL CQRNTPRLNP EESEILWFRF LDTFCEPLME SYREPKNTDG 1601: INKGSLGVKS LERHVNESDV AIKWRIPRSD TAATHILRKL ISQFIKEIVE GMIGYVRLPT IMTKLLSDNG TQEFGDFKLT ILGMLGTYGF ERRILDTAKS 1701: LIEDDTFYSM NLLKKGASHG YAPRSLLCCI CSCPLTKTFS ALRVRVFNCG HATHLQCEPS ENETSTSASS IHVSSSGCPV CMTKKTSKSS LKGKSFYRDY 1801: GLISTVSSNA GSSQRASPYS HENEMSDHSH NQQLSRFEIL TNLQKDQRLV QIESLPRLRL APPAVYHEKV SRLSGFTPGE SSGKDTKPVK TGQGKKPKTK 1901: GSIFGSTFGK SFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)