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AT4G01290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1744 Blast hits to 1308 proteins in 219 species: Archae - 0; Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHGPeggNOG:ENOG410Y5Y9EMBL:AK221261EMBL:AK229951
EMBL:AK230161EMBL:CP002687EnsemblPlants:AT4G01290EnsemblPlants:AT4G01290.1
entrez:828103ExpressionAtlas:Q56YR0GeneID:828103Gramene:AT4G01290.1
hmmpanther:PTHR34802OMA:HADIEPAPhylomeDB:Q56YR0Proteomes:UP000006548
RefSeq:NP_192038.3STRING:3702.AT4G01290.1TAIR:AT4G01290UniGene:At.3807
UniProt:Q56YR0
Coordinates (TAIR10) chr4:-:538213..543282
Molecular Weight (calculated) 108557.00 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.93
Length 991 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSIANEQQF AMDQLVETND DSEKKPRITY TRKFLISLSE KDVCKKLPNL PGEFDEALLL DFEDPSPERA RISGDFSSHG FRRNDYSSSP PTRGELGTNS
101: RGTHGRWEGR SGGWNDKDSD SQSDRDSGEP GRRSGMPSRR SWQAPEHDGL LGKGSFPKPS GFGAGTSAPR PQSNDSHQLS RTNEPYHPPR PYKAPPFTRR
201: DARDSFNDET FGSSDSTSED RAEEERKRRA SFELLRKEHQ KAFQERQKSN PDLRKNDFDF TELLGESKDD KGRPSRSDEV NHAPTIPGSS NTSLPSQSNA
301: PRPLVPPGFA STILEKKQGE KPQTETSQYE RSPLNSKGIN VVNGTSVNNG GKPLGIKIGS SEMLIEGEDV RVSSTDANER AVNISSLLGI STDTVNKDKS
401: FEKLSSISTP TEIQGYPIKS EKATMTLGKK KSLEHSDGPS ILDKIFNTAI NLNSGDSSNM NKKNVEKVEE IRSPQTINKS SKFAHLFLEE DNKPVEVLPS
501: SEPPRGLLSL LQGADKLQTF DTKANPDLST DFPFQGHATK RTDQLSSTST TKSVTAVPPV LTCEDLEQSI LSEVGDSYHP PPPPVDQDTS VPSVKMTKQR
601: KTSVDDQASQ HLLSLLQRSS DPKSQDTQLL SATERRPPPP SMKTTTPPPS VKSTTAGEAD PGKSLTLENL FGSAFMNELQ SIGEPVSGRA MVSDAPGVPL
701: RSERSIGELS QRNQIRPDGP PGGVLALPED GNLLAVGGHA NPSKYMSFPG SHNQEPEVAF NISDKLAALN SGPRNERPTM GGQDGLFLHQ HPQQYVTNPS
801: SHLNGSGPVF HPFDSQHAHV KPQLDFMGPG STMSQHHDPP PNHRFPPNMI HRPPFHHTPT SGHPEFDRLP PHMMQKMHMQ DNLQHHHLMQ GFPGSGPQPH
901: HSPHVNNQMP GLIPELNPSQ GFPFAHRQPN YGMPPPGSQV NRGEHPASLQ TLLGIQQRMD PAKQIPAVGQ AGGPNRQGSV GHELDLGFGY R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)