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AT1G21580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2; Bacteria - 615; Metazoa - 1993; Fungi - 936; Plants - 1540; Viruses - 149; Other Eukaryotes - 1177 (source: NCBI BLink).
Protein Annotations
EC:3.1.-.-eggNOG:COG5084eggNOG:KOG1492EMBL:AC015447
EMBL:BT030384EMBL:CP002684EnsemblPlants:AT1G21580EnsemblPlants:AT1G21580.1
entrez:838759ExpressionAtlas:Q3ED78Genevisible:Q3ED78GO:GO:0003677
GO:GO:0003723GO:GO:0004518GO:GO:0046872Gramene:AT1G21580.1
hmmpanther:PTHR23102hmmpanther:PTHR23102:SF13InParanoid:Q3ED78InterPro:IPR000571
ncoils:CoilPaxDb:Q3ED78Pfam:P0C945Pfam:Q3ED78
Pfscan:PS50103PhylomeDB:Q3ED78PRO:PR:Q3ED78PROSITE:PS50103
ProteinModelPortal:Q3ED78Proteomes:UP000006548SMART:SM00356STRING:3702.AT1G21580.1
TAIR:AT1G21570UniGene:At.41647UniProt:P0C945UniProt:Q3ED78
Coordinates (TAIR10) chr1:-:7557822..7565655
Molecular Weight (calculated) 238763.00 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.81
Length 2166 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSSHYNPTY DPWNSPYSPH LHPPSAPLPP PPPLPPPPPP RQSHPESPNL YGRSTQSNGQ RQDYLHQYSH HRQDLPPNTV VNQPTSNYYQ HPPPLQQQHQ
0101: PLSLQQQQQH PQYIPQQVSY EPQRISQPLT SSIQCTESQS DWVGFNEKRL DSWTVDSGPG RSRVDDGPSR NYQYDYSRNS SGVNRGLDGS SRSRDEFRSL
0201: GYARKESGVT RTEGNYQARG QLKSESDRYV RGLGDGNRVL SSSVGYGSDR YGLTVSRDVT RSSASREGAR ETRNEGRTLY PEKKDDYYHS EIEQYFDRGR
0301: REASNELNRT PRKQVQKKSA LLRLETPRSY KNSRENEWSR QHNHHNGNGK RFNSNSYRGK EHLGHSDRGL VEKQRGRSPV DLDISFKSNV LVAKPVASPT
0401: SAGIRSGASV TPRSIKARRA LLSDKNEKVS VTERNGKLGT HLSDEISVSE GFRRSTRQTT ASKNEKEPDS HSTPSSSDSG GKLNKVRFVN GVVQDSKVKL
0501: TDSGPEASTH DTEKISSFCE TLIEAKDDIN VKHGINTEAC STEEGVIDGN QSTLKSHEDV LDRTSTDCNA GEALLPKVME MDEILKTKTT INTSPGKLPV
0601: SWPTVADLSG CSEDMDCDED MDCDEDMDCI PSRNIPMMEV NTGFEERKSI NSSDGSLGYG GKDFQKPYLD ASIYFNREDP GDKVLAKSDI GGIEDDNKRI
0701: DKNVDSLSPE NDSSRGRPMG LDSPASLDIA NVSLDLANSN NSASGDLANA NSFTVGTYMN PMVTSPDKSV VFQMESKNLP HCKNTVNAPV ENVSGKGYME
0801: TTPLNVAAET ADNMDSEEGK QTCVNDTSSS LTKVGVKGSS NVLSVERTGG CSHSDESDLA MAVPSEGCME NVSTERLVPD EELILKSYHP AEIPCVDSGS
0901: DSRGLKTCLL EPNVSLSKDL TDCARESLVE QDVSQRSAIF CDKLPSLSAF VTETTLAIGI NGMSGNETVT DTESGLHEIQ PCTTVCKLSP EDRFGYGSSG
1001: AIGSVRSLSI DKNLEKDSSK VSSCLVSDNS VSPCHISPLV AVNEEIQNKI SVKANYSNSQ DGIKHKEDNC TESVEVETHE EKAKLPGGTS KYRTPVTNIT
1101: AGSGGDSLFL CDSLSSSRRR IRSEVHVSAV VDETSKGEEK SKPSGGIVAV RRDSVFPCDS LSSSPRLSRP LRSEIHVASM VDETSKSIEK IESSGGTSEH
1201: RTPETDIVAG SRDSVFPCNS LSNSQRLSFR QLRSEIHVAN MVDETNRVKE SQNGDSLLDT LQEQIMTSHE LTQPGSSAHC DLVMKPMGDP IAKLTDITSD
1301: VGSQEKDLRN IAKTDTFDGE AVSSDGQVSG TEIPGGSGVR VSRSYSHADV KFALTHVKEH VVSVPHRDPQ SKTSMNSKYE IEKRKKKPNY STQKSYPSSL
1401: PYVSDTKKDA NPPIHITKRH TWHRKSDASP SSFVAAKPLS STLSTQQKFP KVTAQSNNSY VRKGNSLLRK PSHGSPGAAL GIPPSAIQLN HFTVEDKSTG
1501: SSNMVDVDNA SSLVKTGEIA TLERQSKPPS DSSTSKLSNA IATSSGKCAL SYSTDHLTTG LPESIMDSAT SGEANFPHSG GDTLKTSDTL IQTGYASDCQ
1601: QKRNPSDLDS SNLKRMVYVK RKANQLVAAS DIHDVSQNQI PSSDGYFKRS KNQLVRNSES RCNQSISLPD DALDTRSAAN MVSERPSSSA FSDSAVMRPF
1701: KQSKFSLVWT QNDPQPRMPI AHMRNQNIVP QLVPWKRVTY WRRLMNSVSA FRNGSSLNIS RKLSMMRKRH TIYTRSTNGY SLRKSKVLSV GGSHLKWSKS
1801: IERDSRKANE EATLAVAAYS KKESEKQSGQ NNTSTASRNH LARERVFRFG SLRYKMDSSR RTLQRISDVD SPCSGPSENG KGVKRPFIPK RLVIGNEEYV
1901: RFGNGNQLVR DPKKRTRVLA NEKVRWSLHN ARLRLAKKKK YCQFFTRFGK CNKDDGKCPY VHDPSKIAVC TKFLNGLCAN ANCKLTHKVI PERMPDCSYY
2001: LQGLCNNEAC PYRHVHVNPI APICDGFLKG YCSEGDECRK KHSYNCPVFE ATGSCSQGLK CKLHHPKNQS KGRKRKRTNE PSQKNARRRY FSSLHNILSE
2101: SEPMVFNRRS TDSEVFGMES LDFITLGTAE YEAGDDNDPA TVQSISSDSE SLISIYNLIT PVALMQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)