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AT1G15240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.975
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phox-associated domain;Phox-like;Sorting nexin, C-terminal
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1); Has 583 Blast hits to 560 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 268; Fungi - 113; Plants - 135; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMHJeggNOG:ENOG41125TJEMBL:AK117186EMBL:AK176485
EMBL:BT006483EMBL:CP002684EnsemblPlants:AT1G15240EnsemblPlants:AT1G15240.1
entrez:838091ExpressionAtlas:Q8GZ64Gene3D:3.30.1520.10GeneID:838091
GO:GO:0016021GO:GO:0035091Gramene:AT1G15240.1hmmpanther:PTHR22999
hmmpanther:PTHR22999:SF19HOGENOM:HOG000241619InterPro:IPR001683InterPro:IPR003114
Pfam:PF00787Pfam:PF02194Pfscan:PS50195Pfscan:PS51207
PhylomeDB:Q8GZ64PROSITE:PS50195PROSITE:PS51207Proteomes:UP000006548
RefSeq:NP_172976.2SMART:SM00313STRING:3702.AT1G15240.2SUPFAM:SSF64268
TAIR:AT1G15240TMHMM:TMhelixUniGene:At.41939UniProt:Q8GZ64
Coordinates (TAIR10) chr1:+:5243799..5246495
Molecular Weight (calculated) 80073.70 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.59
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTQKQVVTI RDLVDEAKKR IVIVVICVVG LSYLMSLTSS SVLVNLTPAV LLIILFRYYT LDSEMKRKAA AYTNKPSSSL NAPTLNKTPE LPKAAPRSDW
101: RSKVNSQVVE DAIDHFTRHL ISEWVLDLWY SRITPDKQGP EELVFIINDV LGELSRRFRN VNLIDLLTRD LIDIICRRVE LFRECQAKIE RQQRRSLSFE
201: DRDSELRRVM ASEDKLHPAL FSPESEHKVL QHIVNSLILV TFRPEDLHCA FFHYTVRELF ACCVIRPVLN LANPRFINER IEAAVMSRIK TTIRSSAAEE
301: ASQSEDLSNV SPDHFSRYMD PSVTGVELVQ LKNEQQKNSK KKSATDKQHV KELSKDPLLS MDTRSSRSWN SFPSTSKIGD GSKDPQGHRG GEGWGDVLDM
401: MSQRKTETLA PEHLESVWAK GRNYKKKEGG KVDERVPPRW SSKAGDCNEN TVNARESSQR KVVNTDSHLS SYSSAEEDEE QTKSSHSYTS EDEETVTGLN
501: SPGTRVWDGR TKKNLGVSRI HHPLENSGRS LKKTSKGHER YQQVPGHQSG RKRSRISGHI IDDDDSDDSE DGSLTRSYSG MSATSSTSYV SAAESDLPNA
601: PKSSLLVDSF AKLRCEVLGA NIVKGSSKMF AVYSVAVTDE SNHSWSIKRR FRHFEELHRR LKVFPEYKLH LPPKHFLSTG VDIPVIQERC VLLDEYIKVK
701: RHVSCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)