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AT5G08230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT domain-containing protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT5G23150.1); Has 47075 Blast hits to 25226 proteins in 1376 species: Archae - 78; Bacteria - 7272; Metazoa - 16776; Fungi - 5193; Plants - 9119; Viruses - 1951; Other Eukaryotes - 6686 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y5WDeggNOG:KOG1904EMBL:AK229633EMBL:AL357612
EMBL:CP002688EnsemblPlants:AT5G08230EnsemblPlants:AT5G08230.1entrez:830719
GeneID:830719Genevisible:Q9LEY4GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0006397GO:GO:0009506GO:GO:0009908
Gramene:AT5G08230.1hmmpanther:PTHR12550hmmpanther:PTHR12550:SF49HOGENOM:HOG000090612
InParanoid:Q9LEY4InterPro:IPR000313InterPro:IPR006569InterPro:IPR006903
iPTMnet:Q9LEY4KEGG:ath:AT5G08230OMA:ENEERRFPaxDb:Q9LEY4
Pfam:PF00855Pfam:PF04818Pfam:Q9LEY4Pfscan:PS50812
Pfscan:PS51391PhylomeDB:Q9LEY4PIR:T50508PRIDE:Q9LEY4
PRO:PR:Q9LEY4PROSITE:PS50812PROSITE:PS51391ProteinModelPortal:Q9LEY4
Proteomes:UP000006548RefSeq:NP_196440.1SMART:SM00293SMART:SM00582
SMR:Q9LEY4STRING:3702.AT5G08230.1SUPFAM:SSF63748TAIR:AT5G08230
UniGene:At.22840UniProt:Q9LEY4
Coordinates (TAIR10) chr5:-:2643846..2649788
Molecular Weight (calculated) 156563.00 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.67
Length 1445 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAPGRKRGAN KAMAIGEMRL GDLVLAKVKG FPAWPAKIGQ PEDWNQAPDP KKHFVQFYGT GEIGFVTPPD IQPFTSETKK KLSARCQGKT VKYFSQAVEE
0101: ISAAFEESQK QKSDIVGNEA LLNAVEPSVT KPKYLNQASS DGKSDKFSSR ADPCLGKLVE NNGAEINPDV GEQDSSISNN RNTSPSSEPV EHGSPDPILK
0201: VAVDDKIDNV TCTDHSDGTG NNLVNDQRII RKTTDDSNKR CKDEVRAKRV PDSRAATDNH ILGPNQKLKG SIKGQDHGSK KGQDHGCRKE SSDSKVVTDL
0301: NIASSKKPKE LLKEKKKRFE NELGKSASGA DESKRAAKRP RSEDAKDQKQ CKSKRLVPVG EGKAEISDST GVVSIFKREI VLGISALGGK NQFDKDMVAY
0401: TKRRKQTVEH TSVSSFPGSL VKEGANHPEQ KISSSSDSDI KVQAAQLPKR RRAVCIYDDD DDDEDPKTPV HGGLSNIPIA STDAPKSANA SHNTSIKAKL
0501: LAGSTDSVKT GKVPLYKHNK DASLALPDSV EGYNSRMGKP FKALLQKNIK PILRSPKNSY QLVSFKKQVT GQNKTAKVAG AGMPDSVEGP SNSSYMGKPV
0601: IKLPPQNVKQ TLRSPKKSPQ LFSTKELVAV QNKIAKVSGA GIPKKYHGDS SKDVVAGSDR VSSSHSQTAN QRSKPAFGEK PTSTPKVATR LDVEVSRDTF
0701: VNLSADVIDV NQENGNAPLF SFGMSDSSSS CMKDLIAAAQ AKRKQAHSQF SPFVNLDHNS LNIDSMQTSK SPFMVQNVSS PAADATLIVA QEHQEVLTPS
0801: NHGRQSSSSN QAGTEENEER RFSSGHRSVG GSLSGATEAA ISRDTFEGMI ETLSRTKESI RRATRVAIDC AKYGIANEVV ELLIRKLEIE PHFPRKVDLF
0901: FLLDSIIQSS HSQKGRARSL YIPTVQAALP RLLGAAAPPG TGARENRHQC RKVLRLWLKR KIFPDFLLRR YIGDLGASGD DKTVGFSLRR PSRSERAVDD
1001: PLRDMEGMLV DEYGSNANFQ LPGYLASLTF GDDEEEDLPS TSQEVKNTHM EVKITHMEEP VLALGKLEAH DSSSDKPHCV VDVNGGLEME DASCQLKDDV
1101: CGIEAKEDSP ATTCATELPS FPAGSPPLPH ESPPSPPPQP PSSPPPPSSP PQLAPAPPPS DHCLPPPTAP LAPAQSIALP PSSITRPSMP SHPSLPLQPG
1201: FAPPAYPLLQ HEYQISMQRD HSSIATSNQI APVPVNAAHG RHADGGVKSE YLMPQSSSFA PVGMCSYGEP LPFISSKQLE YGNSDVLFKQ EASSQNQQLR
1301: PINTSFLQRP MIRNLAPAPS SHFPLPCRIV QSEPQRSSFP HPYHFPSQPV DGRQHMNEEW RMPPNGCSAD PQYGAWIGVR NPFPGSRTVT DGVFQPPPER
1401: PPSGTVRYQL AANNLQGGST ISGNIASQML LSRPDVPSAA QYRPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)