AT5G64390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding KH domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HUA ENHANCER 4 (HEN4); CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G09560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25743442..25747380 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93697.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 857 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERNSVKFHA EKRSGAFDPG SGFGSSKRVK THHTQLLSAL VVPVGHAAFR LLCPLSHVGA VIGKSGNVIK QLQQSTGAKI RVEEPPSGSP DRVITIIAQA 101: DSKSRVKLGA NNNGNAEGEK KEEEVEVSKA QGALIKVFEL LAAEADSDTV VCRLLTESSH AGAVIGKGGQ MVGSIRKETG CKISIRIENL PICADTDDEM 201: VEVEGNAIAV KKALVSISRC LQNCQSIDKV RMVGNRPLEK EFQASLHRPI ETIIQESLPR SVEVNPYDYR LRNDEIFPRG TVARANDVIP HDTLHLRRIE 301: AVPQGALRMH IEADRQDVLR RHVEADRQDA LRRRIDVVPQ ETLYMPSDVL RGDCFRQHRE RDDSHDSLHR PFEMVPRDAM GMPFESFPRD AYGRPIETMT 401: QETLRGQSAD YLAHRYSTLD THPHSFTTSA SMANTATMKP PPSEVEVGNQ DVVFKILCST ENAGGVIGTG GKVVRMLHSE TGAFINVGNT LDDCEERLIA 501: VTASENPECQ SSPAQKAIML IFSRLFELAT NKILDNGPRS SITARLVVPT SQIGCVLGKG GVIVSEMRKT TGAAIQILKV EQNPKCISEN DQVVQITGEF 601: PNVREAIFHI TSRLRDSVFS NSMKNSLAKS SSALTTERFY DRQSDNPLSI GSHQSVSNPA TNSSSLHRRS EDSFLSGSHS SVNYSRSVGT DPYIRPEDPF 701: PDRFNPSAGY SHNFGRRFTM DHSDNSHHLT EAPSRLWASP PPAAPRGLSD ASGGLSSARA GHVLGSGHKS AIVTNTTVEI RVPANAMSFV YGEQGYNLEQ 801: LRQISGARVI IHEPPLGTSD RIIVISGTPD QTQAAQNLLH AFILTGETSL SKKYNLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)