AT5G46190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding KH domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G18375.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18723435..18725834 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69680.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK 101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD 201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS 301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK 401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS 501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR 601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)