AT5G04430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding to TOMV RNA 1L (long form) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S); FUNCTIONS IN: single-stranded RNA binding, nucleic acid binding; INVOLVED IN: RNA splicing, regulation of viral protein levels in host cell; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1250602..1253523 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33822.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 313 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESTESYAAG SPEELAKRSP EPHDSSEADS AEKPTHIRFL VSNAAAGSVI GKGGSTITEF QAKSGARIQL SRNQEFFPGT TDRIIMISGS IKEVVNGLEL 101: ILDKLHSELH AEDGNEVEPR RRIRLVVPNS SCGGIIGKGG ATIKSFIEES KAGIKISPLD NTFYGLSDRL VTLSGTFEEQ MRAIDLILAK LTEDDHYSQN 201: VHSPYSYAAG YNSVNYAPNG SGGKYQNHKE EASTTVTIGV ADEHIGLVLG RGGRNIMEIT QMTGARIKIS DRGDFMSGTT DRKVSITGPQ RAIQQAETMI 301: KQKVDSATER TTD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)