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AT2G47580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : spliceosomal protein U1A
Curator
Summary (TAIR10)
encodes spliceosomal protein U1A
Computational
Description (TAIR10)
spliceosomal protein U1A (U1A); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to salt stress, nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleolus, nucleus, U1 snRNP; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 2473 Blast hits to 2417 proteins in 290 species: Archae - 0; Bacteria - 37; Metazoa - 1259; Fungi - 517; Plants - 407; Viruses - 1; Other Eukaryotes - 252 (source: NCBI BLink).
Protein Annotations
BioGrid:4706eggNOG:ENOG410XPZIeggNOG:KOG4206EMBL:AC002535
EMBL:AY052663EMBL:AY059875EMBL:AY093341EMBL:AY142070
EMBL:CP002685EMBL:Z49991EnsemblPlants:AT2G47580EnsemblPlants:AT2G47580.1
entrez:819371Gene3D:3.30.70.330GeneID:819371Genevisible:Q39244
GO:GO:0000166GO:GO:0000398GO:GO:0005634GO:GO:0005681
GO:GO:0005685GO:GO:0005730GO:GO:0005829GO:GO:0030619
GO:GO:0035614Gramene:AT2G47580.1hmmpanther:PTHR10501hmmpanther:PTHR10501:SF17
HOGENOM:HOG000217519InParanoid:Q39244IntAct:Q39244InterPro:IPR000504
InterPro:IPR012677InterPro:IPR024888KEGG:ath:AT2G47580KO:K11091
OMA:ENQMVITPANTHER:PTHR10501PaxDb:Q39244Pfam:PF00076
Pfam:PF13893Pfam:Q39244Pfscan:PS50102PhylomeDB:Q39244
PIR:S59118PRIDE:Q39244PRO:PR:Q39244PROSITE:PS50102
ProteinModelPortal:Q39244Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_182280.1
SMART:SM00360SMR:Q39244STRING:3702.AT2G47580.1SUPFAM:SSF54928
TAIR:AT2G47580tair10-symbols:U1AUniGene:At.200UniProt:Q39244
Coordinates (TAIR10) chr2:+:19517229..19518686
Molecular Weight (calculated) 28076.00 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.56
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)