suba logo
AT1G03860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Predictors External Curations
AmiGO : mitochondrion 11743115
AmiGO : mitochondrion 14671022
AmiGO : mitochondrion 16618929
AmiGO : mitochondrion 17883375
AmiGO : mitochondrion 20197505
AmiGO : plastid 16618929
TAIR : plastid 15028209
TAIR : mitochondrion 18385124
TAIR : mitochondrion 15276431
TAIR : mitochondrion 11743115
TAIR : vacuole 15539469
TAIR : plastid 16618929
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30865669 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24012629 (2013): nucleus
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18385124 (2008): mitochondrion
  • PMID:18189341 (2008): mitochondrion
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): unclear
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15276431 (2004): mitochondrion
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : prohibitin 2
Curator
Summary (TAIR10)
prohibitin 2
Computational
Description (TAIR10)
prohibitin 2 (PHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 8 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 7 (TAIR:AT5G44140.1); Has 3974 Blast hits to 3972 proteins in 1182 species: Archae - 185; Bacteria - 2042; Metazoa - 484; Fungi - 300; Plants - 234; Viruses - 15; Other Eukaryotes - 714 (source: NCBI BLink).
Protein Annotations
BioGrid:24464eggNOG:COG0330eggNOG:KOG3090EMBL:AC003027
EMBL:AF370317EMBL:AY063102EMBL:CP002684EMBL:U66592
EMBL:U89791EnsemblPlants:AT1G03860EnsemblPlants:AT1G03860.1EnsemblPlants:AT1G03860.3
entrez:839228GeneID:839228Genevisible:Q9ZNT7GO:GO:0005618
GO:GO:0005739GO:GO:0005747GO:GO:0005773GO:GO:0005774
GO:GO:0009507GO:GO:0009536GO:GO:0016021hmmpanther:PTHR23222
hmmpanther:PTHR23222:SF1HOGENOM:HOG000205692InParanoid:Q9ZNT7IntAct:Q9ZNT7
InterPro:IPR000163InterPro:IPR001107KEGG:ath:AT1G03860KO:K17081
OMA:MQMDTILPANTHER:PTHR23222PaxDb:Q9ZNT7Pfam:PF01145
Pfam:Q9ZNT7PhylomeDB:Q9ZNT7PIR:C86169PRIDE:Q9ZNT7
PRINTS:PR00679PRO:PR:Q9ZNT7ProteinModelPortal:Q9ZNT7Proteomes:UP000006548
RefSeq:NP_171882.1RefSeq:NP_973755.1RefSeq:NP_973756.1SMART:SM00244
STRING:3702.AT1G03860.1SUPFAM:0050593SUPFAM:SSF117892TAIR:AT1G03860
tair10-symbols:ATPHB2tair10-symbols:PHB2UniGene:At.24021UniProt:Q9ZNT7
Coordinates (TAIR10) chr1:-:979611..981157
Molecular Weight (calculated) 31812.50 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.15
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)