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AT2G20530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : prohibitin 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prohibitin 6 (PHB6); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 1 (TAIR:AT4G28510.1); Has 3312 Blast hits to 3310 proteins in 1013 species: Archae - 176; Bacteria - 1509; Metazoa - 442; Fungi - 292; Plants - 251; Viruses - 11; Other Eukaryotes - 631 (source: NCBI BLink).
Protein Annotations
BioGrid:1928eggNOG:COG0330eggNOG:KOG3090EMBL:AC007109
EMBL:AY072378EMBL:AY088363EMBL:AY114620EMBL:CP002685
EnsemblPlants:AT2G20530EnsemblPlants:AT2G20530.1EnsemblPlants:AT2G20530.2entrez:816575
GeneID:816575Genevisible:Q9SIL6GO:GO:0005739GO:GO:0005747
GO:GO:0005774GO:GO:0016020GO:GO:0016021Gramene:AT2G20530.1
Gramene:AT2G20530.2hmmpanther:PTHR23222hmmpanther:PTHR23222:SF1HOGENOM:HOG000205692
InParanoid:Q9SIL6IntAct:Q9SIL6InterPro:IPR000163InterPro:IPR001107
KEGG:ath:AT2G20530KO:K17081OMA:FEINIAKPANTHER:PTHR23222
PaxDb:Q9SIL6Pfam:PF01145Pfam:Q9SIL6PhylomeDB:Q9SIL6
PIR:D84590PRIDE:Q9SIL6PRINTS:PR00679PRO:PR:Q9SIL6
ProteinModelPortal:Q9SIL6Proteomes:UP000006548RefSeq:NP_001077924.1RefSeq:NP_179643.1
SMART:SM00244STRING:3702.AT2G20530.1SUPFAM:0050593SUPFAM:SSF117892
TAIR:AT2G20530tair10-symbols:ATPHB6tair10-symbols:PHB6TMHMM:TMhelix
UniGene:At.47556UniProt:Q9SIL6
Coordinates (TAIR10) chr2:+:8842300..8843787
Molecular Weight (calculated) 31638.50 Da
IEP (calculated) 10.19
GRAVY (calculated) -0.14
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFKNVKVPK GPGGGVIAAV VIGGLSLYGA THTLYNVDGG HRAIVFNRLV GIKDKVYPEG THLMIPWFER PIIYDVRAKP YLVESTSGSR DLQMVKIGLR
101: VLTRPMADQL PEVYRSLGEN YRERVLPSII HETLKAVVAQ YNASQLITQR ESVSREIRKI LTLRAANFHI ALDDVSITGL TFGKEFTAAI EGKQVAAQEA
201: ERAKFIVEKA EQDKRSAVIR AEGEAKSAQL IGQAIANNQA FLTLRKIEAA REIAQTISRS ANKVYLSSND LLLNLQAMDL DVKPKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)