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AT4G31120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.826
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SHK1 binding protein 1
Curator
Summary (TAIR10)
Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Computational
Description (TAIR10)
SHK1 binding protein 1 (SKB1); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 957 Blast hits to 940 proteins in 238 species: Archae - 11; Bacteria - 37; Metazoa - 444; Fungi - 148; Plants - 166; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G31120-MONOMERBioCyc:ARA:GQT-1359-MONOMERBioGrid:14527BRENDA:2.1.1.125
EC:2.1.1.319eggNOG:ENOG410XNZMeggNOG:KOG0822EMBL:AK118648
EMBL:AL161578EMBL:BT005907EMBL:CP002687EnsemblPlants:AT4G31120
EnsemblPlants:AT4G31120.1entrez:829240Gene3D:3.40.50.150GeneID:829240
Genevisible:Q8GWT4GO:GO:0005634GO:GO:0005829GO:GO:0006351
GO:GO:0006355GO:GO:0008276GO:GO:0008469GO:GO:0009909
GO:GO:0010220GO:GO:0019918GO:GO:0034969hmmpanther:PTHR10738
HOGENOM:HOG000175933InParanoid:Q8GWT4InterPro:IPR007857InterPro:IPR025799
InterPro:IPR029063KEGG:ath:AT4G31120KO:K02516OMA:KTDMRAW
PANTHER:PTHR10738PaxDb:Q8GWT4Pfam:PF05185Pfam:Q8GWT4
Pfscan:PS51678PhylomeDB:Q8GWT4PIR:T10666PIRSF:PIRSF015894
PRIDE:Q8GWT4PRO:PR:Q8GWT4PROSITE:PS51678ProteinModelPortal:Q8GWT4
Proteomes:UP000006548RefSeq:NP_194841.2RefSeq:NP_974647.1SMR:Q8GWT4
STRING:3702.AT4G31120.1SUPFAM:SSF53335TAIR:AT4G31120tair10-symbols:ATPRMT5
tair10-symbols:SKB1UniGene:At.31771UniGene:At.44014UniProt:Q8GWT4
Coordinates (TAIR10) chr4:-:15132185..15136568
Molecular Weight (calculated) 71874.20 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.23
Length 642 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLGERGGWE RTESRYCGVE TDFSNDVTHL LNFNISTGGF DYVLAPLVDP SYRPSLVEGN GVDTQVLPVC GSDLVLSPSQ WSSHVVGKIS SWIDLDSEDE
101: VLRMDSETTL KQEIAWATHL SLQACLLPTP KGKSCANYAR CVNQILQGLT TLQLWLRVPL VKSEGDSMDD TSEGLNDSWE LWNSFRLLCE HDSKLSVALD
201: VLSTLPSETS LGRWMGESVR AAILSTDAFL TNARGYPCLS KRHQKLIAGF FDHAAQVVIC GKPVHNLQKP LDSSSEGTEK NPLRIYLDYV AYLFQKMESL
301: SEQERIELGY RDFLQAPLQP LMDNLEAQTY ETFERDSVKY IQYQRAVEKA LVDRVPDEKA SELTTVLMVV GAGRGPLVRA SLQAAEETDR KLKVYAVEKN
401: PNAVVTLHNL VKMEGWEDVV TIISCDMRFW NAPEQADILV SELLGSFGDN ELSPECLDGA QRFLKPDGIS IPSSYTSFIQ PITASKLYND VKAHKDLAHF
501: ETAYVVKLHS VAKLAPSQSV FTFTHPNFST KVNNQRYKKL QFSLPSDAGS ALVHGFAGYF DSVLYKDVHL GIEPTTATPN MFSWFPIFFP LRKPVEVHPD
601: TPLEVHFWRC CGSSKVWYEW SVSSPTPSPM HNTNGRSYWV GL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)