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AT1G71260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21311031 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WHIRLY 2
Curator
Summary (TAIR10)
Encodes WHY2, a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus. WHY2 is a member of the Whirly family proteins present mainly in the plant kingdom performing various activities related to DNA metabolism. Crystal structure of Solanum tuberosum WHY2, a close homolog of Arabidopsis WHY2, reveal that Whirly proteins bind to single strand DNA to promote accurate repair of DNA double-strand breaks over an error-prone repair pathway.
Computational
Description (TAIR10)
WHIRLY 2 (ATWHY2); CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT1G14410.1); Has 105 Blast hits to 105 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioGrid:28687eggNOG:ENOG410IY52eggNOG:ENOG410XZPWEMBL:AB493532
EMBL:AC016162EMBL:AY072110EMBL:AY122961EMBL:CP002684
EnsemblPlants:AT1G71260EnsemblPlants:AT1G71260.1entrez:843467Gene3D:2.30.31.10
GeneID:843467Genevisible:Q8VYF7GO:GO:0003677GO:GO:0005739
GO:GO:0006281GO:GO:0006355GO:GO:0006952Gramene:AT1G71260.1
hmmpanther:PTHR31745hmmpanther:PTHR31745:SF1HOGENOM:HOG000006196InParanoid:Q8VYF7
InterPro:IPR009044InterPro:IPR013742KEGG:ath:AT1G71260OMA:GNLRIDR
PaxDb:Q8VYF7PDB:4KOPPDBsum:4KOPPfam:PF08536
Pfam:Q8VYF7PhylomeDB:Q8VYF7PIR:C96737PRIDE:Q8VYF7
PRO:PR:Q8VYF7ProteinModelPortal:Q8VYF7Proteomes:UP000006548RefSeq:NP_177282.2
SMR:Q8VYF7STRING:3702.AT1G71260.1SUPFAM:SSF54447TAIR:AT1G71260
tair10-symbols:ATWHY2tair10-symbols:WHY2UniGene:At.28009UniGene:At.35209
UniProt:Q8VYF7
Coordinates (TAIR10) chr1:-:26861849..26863391
Molecular Weight (calculated) 26296.40 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.35
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKQARSLLS RSLCDQSKSL FEASTLRGFA SWSNSSTPGR GFPGKDAAKP SGRLFAPYSI FKGKAALSVE PVLPSFTEID SGNLRIDRRG SLMMTFMPAI
101: GERKYDWEKK QKFALSPTEV GSLISMGSKD SSEFFHDPSM KSSNAGQVRK SLSVKPHADG SGYFISLSVN NSILKTNDYF VVPVTKAEFA VMKTAFSFAL
201: PHIMGWNRLT GHVNTEALPS RNVSHLKTEP QLELEWDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)