AT1G48150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : MADS-box transcription factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G50780.1); Has 448 Blast hits to 448 proteins in 59 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 30; Plants - 389; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:17785397..17786368 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36478.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||
| Length | 323 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQSSNVTDCT MRKRGTKRKI EIEKRMTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF VTSPDENSDV VYSFSGYSHA SEIVDCYLNN KSPPKTTINP 101: ESAKFWWEEP DLYRDCDDLS ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL SPSSLKIVSF DQNSYSSLEP 201: SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE 301: DDELLIDISE YLSEEAMECP CFS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)