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AT1G18780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.811
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G29840.1); Has 8581 Blast hits to 8560 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2597; Fungi - 649; Plants - 4074; Viruses - 26; Other Eukaryotes - 1235 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC011809EMBL:CP002684
EMBL:DQ059091EnsemblPlants:AT1G18780EnsemblPlants:AT1G18780.1entrez:838460
Gene3D:3.30.40.10GeneID:838460GO:GO:0008270GO:GO:0016021
Gramene:AT1G18780.1hmmpanther:PTHR22937hmmpanther:PTHR22937:SF18HOGENOM:HOG000152571
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G18780OMA:NETNTVR
Pfam:PF13639Pfscan:PS50089PhylomeDB:Q9M9U8PIR:F86321
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_173313.1SMART:SM00184
SMR:Q9M9U8SUPFAM:SSF57850TAIR:AT1G18780TMHMM:TMhelix
UniGene:At.64833UniProt:Q9M9U8
Coordinates (TAIR10) chr1:-:6476258..6477235
Molecular Weight (calculated) 36921.60 Da
IEP (calculated) 4.15
GRAVY (calculated) -0.07
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MNELLQENPK RLNIIDKIYL FLIVLAIMIS SFAHEIEHNP VPEDVGIINI SVATTKIYQS IISNYDLYDE LTSEFSCIPV SLRDCVAVEL TEFLTGSGKI
101: TPIDAYHVLL ELFRFVDEIT SSDDYTPGCA LRVLMTLTIA IPPEHIEEDV LGLEDEQDVY GEASSSQFEE VVPFYGLPYF RDDYNDYFPY EEASSSQLGE
201: VVLFHGLPHL RDEHHASFGF DHQIEEASHS QIEEVFQVSF NETNTVRLKP ASKLTVGALN RKTYKKASGV VCENDVCTIC LEEFDDGRSI VTLPCGHEFD
301: EECVLEWFVR SHVCPLCRLE LPCER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)