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AT1G23810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Paired amphipathic helix (PAH2) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G24250.1); Has 824 Blast hits to 569 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 147; Plants - 338; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5602eggNOG:KOG4204EMBL:AC005990EMBL:CP002684
EnsemblPlants:AT1G23810EnsemblPlants:AT1G23810.1entrez:838992Gene3D:1.20.1160.11
GeneID:838992GO:GO:0006355Gramene:AT1G23810.1hmmpanther:PTHR12346
HOGENOM:HOG000057296InterPro:IPR003822KEGG:ath:AT1G23810Pfam:PF02671
Pfscan:PS51477PhylomeDB:Q9ZUB5PIR:D86372PROSITE:PS51477
Proteomes:UP000006548RefSeq:NP_173793.1SMR:Q9ZUB5STRING:3702.AT1G23810.1
SUPFAM:SSF47762TAIR:AT1G23810UniGene:At.51744UniProt:Q9ZUB5
Coordinates (TAIR10) chr1:+:8417495..8418566
Molecular Weight (calculated) 26860.30 Da
IEP (calculated) 5.91
GRAVY (calculated) -0.22
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGSKSPAS SLEDGKAYVN AVKVALEEAE PAKYQEFLRL FHEVIARRMG MATFSARMQD LLKDHPSLCL GLNVMLAPEY QRAIPPEASE EFHKVVGRSV
101: PRPEPTIDDA TSYLIAVKEA FHDEPAKYEE MLKLLNDFKA RRVNAASVIA RVEELMKDHS NLLFGFCVFL SATTSFTTKL KAKFQGDGSQ VVDSVLQIMR
201: MYGEGNKSKH DAYQEIVALV QGHDDLVMEL SQIFTDPSTR V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)