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AT4G11140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytokinin response factor 1
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).
Computational
Description (TAIR10)
cytokinin response factor 1 (CRF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 2 (TAIR:AT4G23750.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:12014eggNOG:ENOG410IZCZeggNOG:ENOG410YQNQEMBL:AF080120
EMBL:AL049876EMBL:AL161531EMBL:AY560849EMBL:BT025176
EMBL:CP002687EnsemblPlants:AT4G11140EnsemblPlants:AT4G11140.1entrez:826715
Gene3D:3.30.730.10GeneID:826715Genevisible:O82503GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351
GO:GO:0009736GO:GO:0009873GO:GO:0042991GO:GO:0048366
GO:GO:0048825Gramene:AT4G11140.1hmmpanther:PTHR31190hmmpanther:PTHR31190:SF27
HOGENOM:HOG000237664InParanoid:O82503IntAct:O82503InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT4G11140OMA:MSESFGGPaxDb:O82503
Pfam:O82503Pfam:PF00847Pfscan:PS51032PhylomeDB:O82503
PIR:T01919PRIDE:O82503PRINTS:PR00367PRO:PR:O82503
PROSITE:PS51032ProteinModelPortal:O82503Proteomes:UP000006548RefSeq:NP_192852.1
SMART:SM00380SMR:O82503STRING:3702.AT4G11140.1SUPFAM:SSF54171
TAIR:AT4G11140tair10-symbols:CRF1UniGene:At.33584UniProt:O82503
Coordinates (TAIR10) chr4:-:6794930..6795793
Molecular Weight (calculated) 31546.90 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.34
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: METEKKVSLP RILRISVTDP YATDSSSDEE EEVDFDALST KRRRVKKYVK EVVLDSVVSD KEKPMKKKRK KRVVTVPVVV TTATRKFRGV RQRPWGKWAA
101: EIRDPSRRVR VWLGTFDTAE EAAIVYDNAA IQLRGPNAEL NFPPPPVTEN VEEASTEVKG VSDFIIGGGE CLRSPVSVLE SPFSGESTAV KEEFVGVSTA
201: EIVVKKEPSF NGSDFSAPLF SDDDVFGFST SMSESFGGDL FGDNLFADMS FGSGFGFGSG SGFSSWHVED HFQDIGDLFG SDPVLTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)