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AT5G04820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.833
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ovate family protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovate family protein 13 (OFP13); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 15 (TAIR:AT2G36050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXWHeggNOG:ENOG410YHQGEMBL:AB008271EMBL:AY065447
EMBL:AY084744EMBL:AY117279EMBL:CP002688EnsemblPlants:AT5G04820
EnsemblPlants:AT5G04820.1entrez:830361GeneID:830361Genevisible:Q9FMC8
GO:GO:0005634GO:GO:0006351GO:GO:0045892Gramene:AT5G04820.1
hmmpanther:PTHR33057hmmpanther:PTHR33057:SF1HOGENOM:HOG000238499InParanoid:Q9FMC8
InterPro:IPR006458KEGG:ath:AT5G04820OMA:LAVPLCYPaxDb:Q9FMC8
Pfam:PF04844Pfam:Q9FMC8Pfscan:PS51754PhylomeDB:Q9FMC8
PRIDE:Q9FMC8PRO:PR:Q9FMC8PROSITE:PS51754Proteomes:UP000006548
RefSeq:NP_196102.1STRING:3702.AT5G04820.1TAIR:AT5G04820tair10-symbols:ATOFP13
tair10-symbols:OFP13TIGRfam:TIGR01568TIGRFAMs:TIGR01568UniGene:At.28479
UniProt:Q9FMC8
Coordinates (TAIR10) chr5:+:1399685..1400467
Molecular Weight (calculated) 28385.00 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.41
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKKMKLSS LFKGGAGGLL AVPLCYNAKT LSFRVGDDMI KTVNSVFFDH HHNNNNGGDL LEAETPESWF TNSSETASHS TESDQDLDAE SLEMVVRGVV
101: RSERLFFDPG VTSSILEEIE EKSKSDLKSK ETVAVGEDRS TPIEEISVAV AMESEDPYGD FRRSMEEMVT SHGELAKDWE SLESMLAWYL RMNGRKSHGV
201: IVSAFVDLLS GLSDSGAGIT SASVSDSARY STAVSSLPSS PVYSLSQGQT EIQEEERRSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)