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AT2G44940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G60490.1); Has 6573 Blast hits to 6019 proteins in 323 species: Archae - 0; Bacteria - 81; Metazoa - 170; Fungi - 124; Plants - 5956; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY7WeggNOG:ENOG410YIZGEMBL:AC002388EMBL:AK229616
EMBL:AY087052EMBL:BT008564EMBL:BT008677EMBL:CP002685
EnsemblPlants:AT2G44940EnsemblPlants:AT2G44940.1entrez:819103Gene3D:3.30.730.10
GeneID:819103Genevisible:Q8LBQ7GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873GO:GO:0044212Gramene:AT2G44940.1
hmmpanther:PTHR31985hmmpanther:PTHR31985:SF42HOGENOM:HOG000237624InParanoid:Q8LBQ7
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT2G44940OMA:CGADAGF
PaxDb:Q8LBQ7Pfam:PF00847Pfam:Q8LBQ7Pfscan:PS51032
PhylomeDB:Q8LBQ7PIR:T00399PRINTS:PR00367PRO:PR:Q8LBQ7
PROSITE:PS51032ProteinModelPortal:Q8LBQ7Proteomes:UP000006548RefSeq:NP_182021.1
SMART:SM00380SMR:Q8LBQ7STRING:3702.AT2G44940.1SUPFAM:SSF54171
TAIR:AT2G44940UniGene:At.14592UniProt:Q8LBQ7
Coordinates (TAIR10) chr2:+:18537294..18538181
Molecular Weight (calculated) 31986.60 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.54
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MARQINIESS VSQVTFISSA IPAVSSSSSI TASASLSSSP TTSSSSSSST NSNFIEEDNS KRKASRRSLS SLVSVEDDDD QNGGGGKRRK TNGGDKHPTY
101: RGVRMRSWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD VAALAIKGTT AYLNFPKLAG ELPRPVTNSP KDIQAAASLA AVNWQDSVND VSNSEVAEIV
201: EAEPSRAVVA QLFSSDTSTT TTTQSQEYSE ASCASTSACT DKDSEEEKLF DLPDLFTDEN EMMIRNDAFC YYSSTWQLCG ADAGFRLEEP FFLSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)