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AT2G40230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G27620.1); Has 2517 Blast hits to 2503 proteins in 143 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 52; Plants - 2458; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G40230-MONOMEReggNOG:ENOG410IVCSeggNOG:ENOG410ZPZ2EMBL:AF085279
EMBL:AY084365EMBL:CP002685EnsemblPlants:AT2G40230EnsemblPlants:AT2G40230.1
entrez:818615Gene3D:3.30.559.10GeneID:818615GO:GO:0016747
Gramene:AT2G40230.1hmmpanther:PTHR31642hmmpanther:PTHR31642:SF19HOGENOM:HOG000237410
InterPro:IPR003480InterPro:IPR023213KEGG:ath:AT2G40230OMA:EYLLVYK
Pfam:PF02458PhylomeDB:Q9XEF2PIR:H84826Proteomes:UP000006548
RefSeq:NP_181552.1SMR:Q9XEF2TAIR:AT2G40230UniGene:At.43695
UniProt:Q9XEF2
Coordinates (TAIR10) chr2:-:16803285..16804586
Molecular Weight (calculated) 47661.50 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.01
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLVHVKEA TVITPSDQTP SSVLSLSALD SQLFLRFTIE YLLVYPPVSD PEYSLSGRLK SALSRALVPY FPFSGRVREK PDGGGGLEVN CRGQGALFLE
101: AVSDILTCLD FQKPPRHVTS WRKLLSLHVI DVLAGAPPLV VQLTWLRDGG AALAVGVNHC VSDGIGSAEF LTLFAELSKD SLSQTELKRK HLWDRQLLMP
201: SPIRDSLSHP EFNRVPDLCG FVNRFNAERL VPTSVVFERQ KLNELKKLAS RLGEFNSKHT SFEVLSAHVW RSWARSLNLP SNQVLKLLFS VNIRDRVKPS
301: LPSGFYGNAF VVGCAQTTVK DLTEKGLSYA TMLVKQAKER VGDEYVRSVV EAVSKERASP DSVGVLILSQ WSRLGLEKLD FGLGKPVHVG SVCCDRYCLL
401: LPIPEQNDAV KVMVAVPSSS VDTYENLVTS PNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)