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AT2G41310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : response regulator 3
Curator
Summary (TAIR10)
Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling.
Computational
Description (TAIR10)
response regulator 3 (RR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 9 (TAIR:AT3G57040.1); Has 36974 Blast hits to 36596 proteins in 2486 species: Archae - 189; Bacteria - 32197; Metazoa - 9; Fungi - 371; Plants - 1334; Viruses - 4; Other Eukaryotes - 2870 (source: NCBI BLink).
Protein Annotations
BioGrid:4067eggNOG:COG5641eggNOG:KOG1601EMBL:AB010917
EMBL:AC005662EMBL:AY074643EMBL:CP002685EnsemblPlants:AT2G41310
EnsemblPlants:AT2G41310.1entrez:818730ExpressionAtlas:O80365GeneID:818730
Genevisible:O80365GO:GO:0000156GO:GO:0000160GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0007623GO:GO:0009736
Gramene:AT2G41310.1hmmpanther:PTHR26402hmmpanther:PTHR26402:SF507HOGENOM:HOG000034820
InParanoid:O80365IntAct:O80365InterPro:IPR001789InterPro:IPR011006
KEGG:ath:AT2G41310KO:K14492OMA:METESKFPaxDb:O80365
Pfam:O80365Pfam:PF00072Pfscan:PS50110PhylomeDB:O80365
PIR:T48853PRO:PR:O80365PROSITE:PS50110ProteinModelPortal:O80365
Proteomes:UP000006548RefSeq:NP_181663.1SMART:SM00448SMR:O80365
STRING:3702.AT2G41310.1SUPFAM:SSF52172TAIR:AT2G41310tair10-symbols:ARR8
tair10-symbols:ATRR3tair10-symbols:RR3UniGene:At.244UniProt:O80365
UniProt:Q0WRG3
Coordinates (TAIR10) chr2:+:17222280..17223536
Molecular Weight (calculated) 25472.70 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.37
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMETESKFH VLAVDDSLFD RKMIERLLQK SSCQVTTVDS GSKALEFLGL RVDDNDPNAL STSPQIHQEV EINLIITDYC MPGMTGYDLL KKVKESAAFR
101: SIPVVIMSSE NVPARISRCL EEGAEEFFLK PVKLADLTKL KPHMMKTKLK KESEKPVAIE EIVVSKPEIE EEEEESSVIE ILPLHQEIES EQLEPMLSSN
201: KRKAMEEVVS TDRSRPKYND ITTSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)