AT5G62920.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : response regulator 6 | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin. | ||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
response regulator 6 (ARR6); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 5 (TAIR:AT3G48100.1); Has 47436 Blast hits to 46969 proteins in 2667 species: Archae - 260; Bacteria - 41739; Metazoa - 17; Fungi - 503; Plants - 1416; Viruses - 4; Other Eukaryotes - 3497 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:25252745..25254158 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 21240.00 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.95 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
Length | 186 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAEVMLPRKM EILNHSSKFG SPDPLHVLAV DDSHVDRKFI ERLLRVSSCK VTVVDSATRA LQYLGLDVEE KSVGFEDLKV NLIMTDYSMP GMTGYELLKK 101: IKESSAFREV PVVIMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVKRLRD SLMKVEDLSF TKSIQKRELE TENVYPVHSQ LKRAKI |
||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)