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AT5G62920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : response regulator 6
Curator
Summary (TAIR10)
Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.
Computational
Description (TAIR10)
response regulator 6 (ARR6); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 5 (TAIR:AT3G48100.1); Has 47436 Blast hits to 46969 proteins in 2667 species: Archae - 260; Bacteria - 41739; Metazoa - 17; Fungi - 503; Plants - 1416; Viruses - 4; Other Eukaryotes - 3497 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AK227844EnsemblPlants:AT5G62920
EnsemblPlants:AT5G62920.1entrez:836412ExpressionAtlas:Q0WSS6GeneID:836412
GO:GO:0000160GO:GO:0005622Gramene:AT5G62920.1hmmpanther:PTHR26402
hmmpanther:PTHR26402:SF526InterPro:IPR001789InterPro:IPR011006KEGG:ath:AT5G62920
KO:K14492OMA:MPVTIIMPaxDb:Q0WSS6Pfam:PF00072
Pfam:Q9ZWS6Pfscan:PS50110PhylomeDB:Q0WSS6PRIDE:Q0WSS6
PROSITE:PS50110ProteinModelPortal:Q0WSS6RefSeq:NP_201097.1SMART:SM00448
SMR:Q0WSS6STRING:3702.AT5G62920.1SUPFAM:SSF52172TAIR:AT5G62920
tair10-symbols:ARR6UniGene:At.24207UniProt:Q0WSS6UniProt:Q9ZWS6
Coordinates (TAIR10) chr5:-:25252745..25254158
Molecular Weight (calculated) 21240.00 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.24
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEVMLPRKM EILNHSSKFG SPDPLHVLAV DDSHVDRKFI ERLLRVSSCK VTVVDSATRA LQYLGLDVEE KSVGFEDLKV NLIMTDYSMP GMTGYELLKK
101: IKESSAFREV PVVIMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVKRLRD SLMKVEDLSF TKSIQKRELE TENVYPVHSQ LKRAKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)