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AT2G42280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G51140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:4166eggNOG:ENOG410IJTAeggNOG:ENOG410YDYNEMBL:AC002561
EMBL:AK228981EMBL:BT015339EMBL:BT015712EMBL:CP002685
EnsemblPlants:AT2G42280EnsemblPlants:AT2G42280.1entrez:818829Gene3D:4.10.280.10
GeneID:818829Genevisible:Q66GR3GO:GO:0001046GO:GO:0001228
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0006366
GO:GO:0045944GO:GO:0048573hmmpanther:PTHR16223hmmpanther:PTHR16223:SF29
HOGENOM:HOG000242890InParanoid:Q66GR3InterPro:IPR011598iPTMnet:Q66GR3
KEGG:ath:AT2G42280ncoils:CoilOMA:RANCKCMPaxDb:Q66GR3
Pfam:PF00010Pfam:Q66GR3Pfscan:PS50888PhylomeDB:Q66GR3
PIR:T00937PRIDE:Q66GR3PRO:PR:Q66GR3PROSITE:PS50888
ProteinModelPortal:Q66GR3Proteomes:UP000006548RefSeq:NP_181757.2RefSeq:NP_973670.1
SMART:SM00353SMR:Q66GR3STRING:3702.AT2G42280.1SUPFAM:SSF47459
TAIR:AT2G42280UniGene:At.12448UniGene:At.43726UniProt:Q66GR3
Coordinates (TAIR10) chr2:-:17611428..17613163
Molecular Weight (calculated) 39909.90 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.71
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)