AT1G60250.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : B-box zinc finger family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G68190.1); Has 858 Blast hits to 829 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 846; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:22217077..22217832 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28977.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||
| Length | 251 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQVCHTCRH VTAVIHCVTE ALNFCLTCDN LRHHNNIHAE HVRYQLCDNC SMYPSILFCY EDGMVLCQSC YSHHYNCATN GHQTQVVFAN MNNQHHDHAH 101: MPHVVHHNNN NNHQQQHVGG HQRRAEMFER SCHGDNNCER WMFAMRCELC VASNSNAVVY CPTHNQILCD SCDRMIHSHE DAVPPHSRCK LCVICKRPSR 201: RFLIGGYQFN FPPVHPPAAE GIPVTPPTEL PQQDINYDYL DDVDDFSWFG R |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)