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AT4G37180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G03500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHMDeggNOG:ENOG410YFA9EMBL:BT028985EMBL:CP002687
EnsemblPlants:AT4G37180EnsemblPlants:AT4G37180.1entrez:829872ExpressionAtlas:Q08A94
Gene3D:1.10.10.60GeneID:829872GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT4G37180.1hmmpanther:PTHR31003
hmmpanther:PTHR31003:SF5InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT4G37180Pfam:PF00249Pfscan:PS51294
PhylomeDB:Q08A94PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_568018.1
SMR:Q08A94STRING:3702.AT4G37180.2SUPFAM:SSF46689TAIR:AT4G37180
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.4657UniProt:Q08A94
Coordinates (TAIR10) chr4:+:17504648..17506107
Molecular Weight (calculated) 40877.10 Da
IEP (calculated) 6.63
GRAVY (calculated) -1.00
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)