AT2G27110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transcription factor, FAR1-related (InterPro:IPR004330), MULE transposase, conserved domain (InterPro:IPR018289); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1433 Blast hits to 1269 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 39; Plants - 1388; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11576969..11580405 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96262.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 851 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVHLVEENV SMGNHEIGDE GDVEPSDCSG QNNMDNSLGV QDEIGIAEPC VGMEFNSEKE AKSFYDEYSR QLGFTSKLLP RTDGSVSVRE FVCSSSSKRS 101: KRRLSESCDA MVRIELQGHE KWVVTKFVKE HTHGLASSNM LHCLRPRRHF ANSEKSSYQE GVNVPSGMMY VSMDANSRGA RNASMATNTK RTIGRDAHNL 201: LEYFKRMQAE NPGFFYAVQL DEDNQMSNVF WADSRSRVAY THFGDTVTLD TRYRCNQFRV PFAPFTGVNH HGQAILFGCA LILDESDTSF IWLFKTFLTA 301: MRDQPPVSLV TDQDRAIQIA AGQVFPGARH CINKWDVLRE GQEKLAHVCL AYPSFQVELY NCINFTETIE EFESSWSSVI DKYDLGRHEW LNSLYNARAQ 401: WVPVYFRDSF FAAVFPSQGY SGSFFDGYVN QQTTLPMFFR LYERAMESWF EMEIEADLDT VNTPPVLKTP SPMENQAANL FTRKIFGKFQ EELVETFAHT 501: ANRIEDDGTT STFRVANFEN DNKAYIVTFC YPEMRANCSC QMFEHSGILC RHVLTVFTVT NILTLPPHYI LRRWTRNAKS MVELDEHVSE NGHDSSIHRY 601: NHLCREAIKY AEEGAITAEA YNIALGQLRE GGKKVSVVRK RIGRAAPPSS HGGGIGSGDK TSLSAADTTP LLWPRQDEMI RRFNLNDGGA RAQSVSDLNL 701: PRMAPVSLHR DDTAPENMVA LPCLKSLTWG MESKNTMPGG RVAVINLKLH DYRKFPSADM DVKFQLSSVT LEPMLRSMAY ISEQLSSPAN RVAVINLKLQ 801: DTETTTGESE VKFQVSRDTL GAMLRSMAYI REQLSIVGEL QTESQAKKQR K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)