AT4G38180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17906702..17909404 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90489.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 788 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HALDDDDMLD SPIMPCGNGL VGNSGNYFPN QEEEACDLLD LEPYDGLEFE SEEAAKAFYN SYARRIGFST 101: RVSSSRRSRR DGAIIQRQFV CAKEGFRNMN EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWLVSGFV KDHNHELVPP DQVHCLRSHR QISGPAKTLI 201: DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN NRQKSIEGEI QLLLDYLRQM NADNPNFFYS VQGSEDQSVG NVFWADPKAI MDFTHFGDTV 301: TFDTTYRSNR YRLPFAPFTG VNHHGQPILF GCAFIINETE ASFVWLFNTW LAAMSAHPPV SITTDHDAVI RAAIMHVFPG ARHRFCKWHI LKKCQEKLSH 401: VFLKHPSFES DFHKCVNLTE SVEDFERCWF SLLDKYELRD HEWLQAIYSD RRQWVPVYLR DTFFADMSLT HRSDSINSYF DGYINASTNL SQFFKLYEKA 501: LESRLEKEVK ADYDTMNSPP VLKTPSPMEK QASELYTRKL FMRFQEELVG TLTFMASKAD DDGDLVTYQV AKYGEAHKAH FVKFNVLEMR ANCSCQMFEF 601: SGIICRHILA VFRVTNLLTL PPYYILKRWT RNAKSSVIFD DYNLHAYANY LESHTVRYNT LRHKASNFVQ EAGKSLYTCD VAVVALQEAA KTVSLAMNKE 701: VRRTMANRHF KASSVTGGKH QQEVLAQPEP EDEMDKKINQ LRNELELANR KCEAYRTNLL SVLKEMEDQK LQVSIKVQNI KISLKDNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)