AT3G19070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G06800.2); Has 18617 Blast hits to 9609 proteins in 654 species: Archae - 8; Bacteria - 972; Metazoa - 4790; Fungi - 3902; Plants - 2478; Viruses - 331; Other Eukaryotes - 6136 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6593773..6594977 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37714.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||
| Length | 346 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNLDEFLEE LSSIESHSQK IVKIDEHLKK LDEETKEDED EDAAKIIQDR STAREAEIAL LMDLRQNFLP PPSMSSSSLQ PPSSSTLAPS SSSSLQPPAP 101: LIDFFRSSVS YSHQPPSSST LATSSSPSLQ PPSMSSSSLQ PPASLREFFT SSVSYSHQPS SSSTLATSSF FPSSMPYSVR PPDSSDRPSL REFFPSSPSS 201: SIQPPESSSS KRARLSNIFP SPLSSSPSPF VNPFLRPQAQ EPTIPNFINP IPQISPGLPA LFPNPNPNPN PNPIPNPIRN PDLVWTNRLQ LVFDDAVVRL 301: GGLFSATPKA INELISEEGL TGDQIRSHLQ VLRDRQKAIA DKLALE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)