AT5G60120.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : target of early activation tagged (EAT) 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.1); Has 5042 Blast hits to 4634 proteins in 238 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 4961; Viruses - 7; Other Eukaryotes - 53 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:24208153..24211067 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53167.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 485 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLDLNLDVDS TESTQNERDS ITVKGVSLNQ MDESVTSNSS VVNAEASSCI DGEDELCSTR TVKFQFEILK GGGEEEEEDD DERSAVMMTK EFFPVAKGMN 101: FMDSSAQSSR STVDISFQRG KQGGDFIGSG SGGGDASRVM QPPSQPVKKS RRGPRSKSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD 201: RAAVKFRGLE ADINFVIGDY EEDLKQMANL SKEEVVQVLR RQSSGFSRNN SRYQGVALQK IGGWGAQMEQ LHGNMGCDKA AVQWKGREAA SLIEPHASRM 301: IPEAANVKLD LNLGISLSLG DGPKQKDRAL RLHHVPNNSV CGRNTMMENH MAAAACDTPF NFLKRGSDHL NNRHALPSAF FSPMERTPEK GLMLRSHQSF 401: PARTWQGHDQ SSGGTAVAAT APPLFSNAAS SGFSLSATRP PSSTAIHHPS QPFVNLNQPG LYVIHPSDYI SQHQHNLMNR PQPPP |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)