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AT5G44210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : erf domain protein 9
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational
Description (TAIR10)
erf domain protein 9 (ERF9); FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF domain protein 10 (TAIR:AT1G03800.1); Has 6203 Blast hits to 5781 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6179; Viruses - 2; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioGrid:19694eggNOG:ENOG410JDJReggNOG:ENOG41116MFEMBL:AB005239
EMBL:AB047648EMBL:AY560856EMBL:BT015876EMBL:BT020188
EMBL:CP002688EnsemblPlants:AT5G44210EnsemblPlants:AT5G44210.1entrez:834444
Gene3D:3.30.730.10GeneID:834444Genevisible:Q9FE67GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006952
GO:GO:0009873GO:GO:0016020Gramene:AT5G44210.1hmmpanther:PTHR31677
HOGENOM:HOG000237624InParanoid:Q9FE67IntAct:Q9FE67InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT5G44210KO:K09286MINT:MINT-8062845
OMA:FACHRERPaxDb:Q9FE67Pfam:PF00847Pfam:Q9FE67
Pfscan:PS51032PhylomeDB:Q9FE67PRINTS:PR00367PRO:PR:Q9FE67
PROSITE:PS51032ProteinModelPortal:Q9FE67Proteomes:UP000006548RefSeq:NP_199234.1
SMART:SM00380SMR:Q9FE67STRING:3702.AT5G44210.1SUPFAM:SSF54171
TAIR:AT5G44210tair10-symbols:ATERF-9tair10-symbols:ATERF9tair10-symbols:ERF9
UniGene:At.30087UniProt:Q9FE67
Coordinates (TAIR10) chr5:+:17806742..17807344
Molecular Weight (calculated) 22268.50 Da
IEP (calculated) 10.63
GRAVY (calculated) -0.60
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPRQANGRS IAVSEGGGGK TMTMTTMRKE VHFRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR AYDTAAREFR GSKAKTNFPL PGESTTVNDG
101: GENDSYVNRT TVTTAREMTR QRFPFACHRE RKVVGGYASA GFFFDPSRAA SLRAELSRVC PVRFDPVNIE LSIGIRETVK VEPRRELNLD LNLAPPVVDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)