AT3G02150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|||||||||||||
| Description (TAIR10) | protein_coding : plastid transcription factor 1 | ||||||||||||
| Curator Summary (TAIR10) |
a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation. | ||||||||||||
| Computational Description (TAIR10) |
plastid transcription factor 1 (PTF1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, regulation of transcription, leaf morphogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (TAIR:AT5G60970.1); Has 1398 Blast hits to 1398 proteins in 300 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 2; Plants - 1368; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr3:+:391522..392450 | ||||||||||||
| Molecular Weight (calculated) | 31238.50 Da | ||||||||||||
| IEP (calculated) | 7.29 | ||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||
| Length | 278 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI 101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH 201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQM |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)